PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4107_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 201aa    MW: 22139.5 Da    PI: 9.2735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4107_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.4e-105094554
                                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                         h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  cra_locus_4107_iso_6_len_2099_ver_3 50 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 94
                                         99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1543104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0444594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1547104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-75094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1051100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
ITRTLLTSQL LSYFQGFHGQ PVPNTVPAVP HPPAIRPRVR ARRGQATDPH SIAERLRRER  60
IAERIRALQE LVPSVNKTDR AVMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAPLVSDIP  120
ISSVEDDVGE GGRVQPAWEK WSNDGTERQV AKLMEENVGS AMQFLQSKAL CIMPISLASA  180
ICHTQPPETT SLIKPETHPS P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898025.11e-118transcription factor UNE12 isoform X2
SwissprotO227686e-96UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A022S2E71e-116A0A022S2E7_ERYGU; Uncharacterized protein
STRINGMigut.D00370.1.p1e-117(Erythranthe guttata)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]