PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4107_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 315aa    MW: 33007.5 Da    PI: 6.4041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4107_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09164208554
                                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                          h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  cra_locus_4107_iso_2_len_1857_ver_3 164 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 208
                                          99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-15157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-7164208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MANNPSEAPT DDFLEQILGF PAYTGAGAGA DTNLSPGNDV AALAGAQVPM MLQLSSGDGS  60
AHLGGVGLGA GLGIGSAGAF HGGGFPLGLS LEQGKGGFMK MDEPAGSGKR FRDDIMDGRA  120
ASSSLKPVSG FHGQPVPNTV PAVPHPPAIR PRVRARRGQA TDPHSIAERL RRERIAERIR  180
ALQELVPSVN KTDRAVMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV SDIPISSVED  240
DVGEGGRVQP AWEKWSNDGT ERQVAKLMEE NVGSAMQFLQ SKALCIMPIS LASAICHTQP  300
PETTSLIKPE THPSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095851.11e-165transcription factor UNE12 isoform X1
SwissprotO227681e-123UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A068U7Z51e-163A0A068U7Z5_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_52.971e-152(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]