PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4106_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 360aa    MW: 41083.1 Da    PI: 8.4824
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4106_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.43.4e-2577120144
                                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  cra_locus_4106_iso_2_len_1480_ver_3  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120
                                          79***************************************987 PP
2QLQ591.4e-201044236
                                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                         +FTa+Q+q+L++Q+l++Ky+++++P+Pp+Ll  i+
  cra_locus_4106_iso_2_len_1480_ver_3 10 PFTATQWQELEHQALIFKYMVSGMPIPPDLLYTIR 44
                                         9*****************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-11945IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.8E-161043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6461045IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94177121IPR014977WRC domain
PfamPF088793.3E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSTAARNRYP FTATQWQELE HQALIFKYMV SGMPIPPDLL YTIRRSLDSS LSSQLLLHQP  60
QHVGWNCFQM GFGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE  120
ITTTVPPPTA IPISSITNKN HLPSSPTSHH SFSCLTSLTT TSESSHHQQQ HNNNHFLYTP  180
HHHSSRGAGG AGTDLSSQEN NNTTPTTNFL LDSSTFSSSH AGKSGYSSSY GQGQGSKEEI  240
DQEHAFFSET SGTMRNNVSG QDSSTTWQMA AAPVLTMGSS TLMNQMKQRS SYLQLDDNYS  300
SRRHKQDQQY YGQEDDQQQT KKVMHHFFDE WPPKDKDSWT INETTTDHQH DKLTRNHHFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767378.11e-105PREDICTED: growth-regulating factor 1-like
RefseqXP_016449440.11e-105PREDICTED: growth-regulating factor 1-like isoform X2
TrEMBLA0A068U4L71e-104A0A068U4L7_COFCA; Uncharacterized protein
TrEMBLA0A1S3YB511e-104A0A1S3YB51_TOBAC; growth-regulating factor 1-like isoform X2
TrEMBLA0A1U7VLY81e-104A0A1U7VLY8_NICSY; growth-regulating factor 1-like
STRINGXP_009767378.11e-105(Nicotiana sylvestris)