PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4106_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 389aa    MW: 44575.4 Da    PI: 8.2703
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4106_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.8e-2577120144
                                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  cra_locus_4106_iso_1_len_1568_ver_3  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120
                                          79***************************************987 PP

2QLQ58.81.5e-201044236
                                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                         +FTa+Q+q+L++Q+l++Ky+++++P+Pp+Ll  i+
  cra_locus_4106_iso_1_len_1568_ver_3 10 PFTATQWQELEHQALIFKYMVSGMPIPPDLLYTIR 44
                                         9*****************************97776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-11945IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-161043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6461045IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94177121IPR014977WRC domain
PfamPF088793.7E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSTAARNRYP FTATQWQELE HQALIFKYMV SGMPIPPDLL YTIRRSLDSS LSSQLLLHQP  60
QHVGWNCFQM GFGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE  120
ITTTVPPPTA IPISSITNKN HLPSSPTSHH SFSCLTSLTT TSESSHHQQQ HNNNHFLYTP  180
HHHSSRGAGG AGTDLSSQEN NNTTPTTNFL LDSSTFSSSH AGKSGYRWVL SFSVELIKVL  240
ALVFVWLIDE FFLINSSSYG QGQGSKEEID QEHAFFSETS GTMRNNVSGQ DSSTTWQMAA  300
APVLTMGSST LMNQMKQRSS YLQLDDNYSS RRHKQDQQYY GQEDDQQQTK KVMHHFFDEW  360
PPKDKDSWTI NETTTDHQHD KLTRNHHFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176298.11e-98growth-regulating factor 5
TrEMBLA0A068U4L77e-99A0A068U4L7_COFCA; Uncharacterized protein
STRINGVIT_11s0016g01250.t011e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384