PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4106_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRF | ||||||||
Protein Properties | Length: 389aa MW: 44575.4 Da PI: 8.2703 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.3 | 3.8e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e cra_locus_4106_iso_1_len_1568_ver_3 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120 79***************************************987 PP | |||||||
2 | QLQ | 58.8 | 1.5e-20 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky+++++P+Pp+Ll i+ cra_locus_4106_iso_1_len_1568_ver_3 10 PFTATQWQELEHQALIFKYMVSGMPIPPDLLYTIR 44 9*****************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-11 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-16 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.646 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.941 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.7E-21 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MSTAARNRYP FTATQWQELE HQALIFKYMV SGMPIPPDLL YTIRRSLDSS LSSQLLLHQP 60 QHVGWNCFQM GFGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE 120 ITTTVPPPTA IPISSITNKN HLPSSPTSHH SFSCLTSLTT TSESSHHQQQ HNNNHFLYTP 180 HHHSSRGAGG AGTDLSSQEN NNTTPTTNFL LDSSTFSSSH AGKSGYRWVL SFSVELIKVL 240 ALVFVWLIDE FFLINSSSYG QGQGSKEEID QEHAFFSETS GTMRNNVSGQ DSSTTWQMAA 300 APVLTMGSST LMNQMKQRSS YLQLDDNYSS RRHKQDQQYY GQEDDQQQTK KVMHHFFDEW 360 PPKDKDSWTI NETTTDHQHD KLTRNHHFF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027176298.1 | 1e-98 | growth-regulating factor 5 | ||||
TrEMBL | A0A068U4L7 | 7e-99 | A0A068U4L7_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0016g01250.t01 | 1e-94 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |