PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_40960_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17016.1 Da PI: 11.0239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.6e-09 | 60 | 100 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L cra_locus_40960_iso_1_len_656_ver_3 60 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 100 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-14 | 52 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-15 | 55 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-14 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-6 | 61 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.93E-7 | 74 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
XGGGGGNGGG SGNSSNSVAA MREMIFRIAA MQPIHIDPES VKPPKRRNVK ISKDPQSVAA 60 RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KNQVQSLERA AANRPVGTAP 120 GIGFPVPMSS GSYLPGSVTK VYHHHQAHQN VQHYADA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090906.1 | 5e-78 | transcription factor HEC2-like | ||||
Refseq | XP_027093283.1 | 4e-78 | transcription factor HEC2-like | ||||
Refseq | XP_027147948.1 | 4e-78 | transcription factor HEC2-like | ||||
Swissprot | Q9SND4 | 7e-48 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | A0A068VLN9 | 1e-76 | A0A068VLN9_COFCA; Uncharacterized protein | ||||
STRING | VIT_18s0001g10400.t01 | 7e-76 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Publications ? help Back to Top | |||
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