PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_405_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | DBB | ||||||||
Protein Properties | Length: 242aa MW: 26567.4 Da PI: 6.9066 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 7.8e-08 | 23 | 53 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++lfC ++ lC +C ++ H cra_locus_405_iso_1_len_1057_ver_3 23 TICDVCESAAAILFCAADEAALCSSCDEKVH 53 68**************************998 PP | |||||||
2 | zf-B_box | 28.4 | 3.4e-09 | 72 | 111 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H cra_locus_405_iso_1_len_1057_ver_3 72 EVTRCDICESAPAFFYCEVDGSSLCLQCDMLVHVGgkrtH 111 6789**************************9996544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.769 | 20 | 67 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.1E-8 | 20 | 67 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.36E-6 | 23 | 53 | No hit | No description |
Pfam | PF00643 | 4.2E-6 | 23 | 54 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.2 | 71 | 116 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-10 | 71 | 116 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-7 | 72 | 111 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.82E-8 | 74 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MASAGLLKRX LEESSHRNTI MRTICDVCES AAAILFCAAD EAALCSSCDE KVHLCNKLAN 60 RHIRVGLAEP SEVTRCDICE SAPAFFYCEV DGSSLCLQCD MLVHVGGKRT HGRYLLLRQR 120 VEFPGDKTGR LDELGLQPST PGGPRRESNL TSKETQTQEN QSAHPVPMIE NNMDGEKEVN 180 GKLIDLNARP KRIHGQASNN QEQGMDISNG NNHGSPSVVP IASFERDIEK XSRQKKNQGK 240 TA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970899.1 | 1e-114 | PREDICTED: B-box zinc finger protein 19 | ||||
Swissprot | C0SVM5 | 2e-78 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A061E6F9 | 1e-112 | A0A061E6F9_THECC; B-box type zinc finger family protein | ||||
TrEMBL | A0A1R3HVT3 | 1e-113 | A0A1R3HVT3_COCAP; Zinc finger, B-box | ||||
STRING | EOX97858 | 1e-113 | (Theobroma cacao) |