PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4008_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 387aa    MW: 42501.3 Da    PI: 5.2119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4008_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20173222255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  cra_locus_4008_iso_5_len_2049_ver_3 173 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 222
                                          59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-33172232No hitNo description
PROSITE profilePS5103223.143173230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-32173231IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23173231IPR016177DNA-binding domain
SMARTSM003809.4E-38173236IPR001471AP2/ERF domain
PfamPF008474.0E-14174222IPR001471AP2/ERF domain
PRINTSPR003673.9E-11174185IPR001471AP2/ERF domain
PRINTSPR003673.9E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAAIDLYSR NNPVFSSDPL SEELMRALEP FMKGVSLPSS SPVSFSPPST SSSSSSSFYP  60
FDSEPNLYTG FSSAPSTTQM FSSQGLSSFG QIGVEQTSPI GLNLLTPSQI LQIQAQIQLQ  120
NQQQYVASLS TSVPSFQNCR KLQHQNHQSP LNFLGPKPVA MKQVGNPPKP TKLYRGVRQR  180
HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL RGDFARLNFP NLRHQLSQDF  240
GDFKPLHSSV DAKLQAICQN LANSQKQGNS GKKLVSDPEI VNSSSSSSSS AENNQIQAGF  300
PKLEITYDDS SNGEIIHPIS DQEFKVEASA SSSSSSSPLM SDEISSLEMS SPESEITFLD  360
FAEPTFDDSV NFMLQKFPSV EIDWASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22172230160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075221.11e-158ethylene-responsive transcription factor ERF056-like
TrEMBLA0A068TYQ71e-156A0A068TYQ7_COFCA; Uncharacterized protein
STRINGVIT_00s0662g00040.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471