PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3991_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 121aa MW: 13429.4 Da PI: 9.8862 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 1 | 21 | 36 | 56 |
HCTS-HHHHHHHHHHHHHHHH CS Homeobox 36 klgLterqVkvWFqNrRakek 56 +l+L rqV vWFqNrRa+ k cra_locus_3991_iso_3_len_1543_ver_3 1 RLNLRPRQVEVWFQNRRARTK 21 69*****************98 PP | |||||||
2 | HD-ZIP_I/II | 80.9 | 1.9e-26 | 1 | 55 | 35 | 89 |
HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +L+l+prqv+vWFqnrRARtk+kq+E+dye Lk+++++lkeen+rL+ke +eL++ cra_locus_3991_iso_3_len_1543_ver_3 1 RLNLRPRQVEVWFQNRRARTKLKQTEVDYEILKKCCETLKEENRRLHKELQELKA 55 59***************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 1.80E-5 | 1 | 24 | No hit | No description |
PROSITE profile | PS50071 | 11.467 | 1 | 23 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.4E-7 | 1 | 21 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-8 | 1 | 27 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.98E-8 | 2 | 32 | IPR009057 | Homeodomain-like |
Pfam | PF02183 | 6.9E-12 | 23 | 57 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-19 | 23 | 67 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
RLNLRPRQVE VWFQNRRART KLKQTEVDYE ILKKCCETLK EENRRLHKEL QELKAMKLTA 60 GPLYMQLPAA TLSMCPSCER ITGGGGGGGS GGENSSNKIS FSTGTKPHFY GPPFANTPAA 120 C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 23 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092368.1 | 1e-58 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 2e-47 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A068TY34 | 3e-57 | A0A068TY34_COFCA; Uncharacterized protein | ||||
STRING | GLYMA05G23150.1 | 6e-52 | (Glycine max) | ||||
STRING | PGSC0003DMT400055199 | 4e-52 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
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