PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3991_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 274aa    MW: 30366.1 Da    PI: 8.8158
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3991_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-19120174256
                                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          rk+ ++tkeq  +Le+ F+++ +++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  cra_locus_3991_iso_1_len_1238_ver_3 120 RKKLRLTKEQSLILEDSFKEHTTLNPKQKQALAKRLNLRPRQVEVWFQNRRARTK 174
                                          78889************************************************98 PP

2HD-ZIP_I/II122.81.7e-39120208189
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+dye Lk+++++lk
  cra_locus_3991_iso_1_len_1238_ver_3 120 RKKLRLTKEQSLILEDSFKEHTTLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDYEILKKCCETLK 193
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLre 89 
                                          een+rL+ke +eL++
  cra_locus_3991_iso_1_len_1238_ver_3 194 EENRRLHKELQELKA 208
                                          *************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.698116176IPR001356Homeobox domain
SMARTSM003894.8E-17118180IPR001356Homeobox domain
SuperFamilySSF466892.69E-18119184IPR009057Homeodomain-like
CDDcd000861.07E-15119177No hitNo description
PfamPF000461.7E-16120174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-17120174IPR009057Homeodomain-like
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PfamPF021832.6E-11176210IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-19176220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVSDHHSICS TRLSLSLGSN SNDPTNGNDQ RNKFLTQNGH LMFPSLTLGL SSSSTDQIIT  60
SGKPDQASSM SAVSNSFSNS SVKRERDQDN ISVEEVEVER IISSKVDHQD QDEDQLVGPR  120
KKLRLTKEQS LILEDSFKEH TTLNPKQKQA LAKRLNLRPR QVEVWFQNRR ARTKLKQTEV  180
DYEILKKCCE TLKEENRRLH KELQELKAMK LTAGPLYMQL PAATLSMCPS CERITGGGGG  240
GGSGGENSSN KISFSTGTKP HFYGPPFANT PAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631568.13e-90homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-75HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2C9UQH47e-89A0A2C9UQH4_MANES; Uncharacterized protein
STRINGcassava4.1_013986m1e-89(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]