PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3991_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 274aa MW: 30366.1 Da PI: 8.8158 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.6e-19 | 120 | 174 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++ +++ ++++ LAk+l+L rqV vWFqNrRa+ k cra_locus_3991_iso_1_len_1238_ver_3 120 RKKLRLTKEQSLILEDSFKEHTTLNPKQKQALAKRLNLRPRQVEVWFQNRRARTK 174 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 120 | 208 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+dye Lk+++++lk cra_locus_3991_iso_1_len_1238_ver_3 120 RKKLRLTKEQSLILEDSFKEHTTLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDYEILKKCCETLK 193 69************************************************************************ PP HD-ZIP_I/II 75 eenerLekeveeLre 89 een+rL+ke +eL++ cra_locus_3991_iso_1_len_1238_ver_3 194 EENRRLHKELQELKA 208 *************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.698 | 116 | 176 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-17 | 118 | 180 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-18 | 119 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.07E-15 | 119 | 177 | No hit | No description |
Pfam | PF00046 | 1.7E-16 | 120 | 174 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 120 | 174 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 151 | 174 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.6E-11 | 176 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-19 | 176 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MVSDHHSICS TRLSLSLGSN SNDPTNGNDQ RNKFLTQNGH LMFPSLTLGL SSSSTDQIIT 60 SGKPDQASSM SAVSNSFSNS SVKRERDQDN ISVEEVEVER IISSKVDHQD QDEDQLVGPR 120 KKLRLTKEQS LILEDSFKEH TTLNPKQKQA LAKRLNLRPR QVEVWFQNRR ARTKLKQTEV 180 DYEILKKCCE TLKEENRRLH KELQELKAMK LTAGPLYMQL PAATLSMCPS CERITGGGGG 240 GGSGGENSSN KISFSTGTKP HFYGPPFANT PAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 176 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631568.1 | 3e-90 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-75 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2C9UQH4 | 7e-89 | A0A2C9UQH4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013986m | 1e-89 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Publications ? help Back to Top | |||
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