PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3966_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 378aa MW: 41322.8 Da PI: 4.7978

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3966_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115	4.9e-36	61	151	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 Fl+k+y++++d++++++isw+++g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ cra_locus_3966_iso_3_len_1350_ver_3 61 FLTKTYQLVDDPTIDDIISWNDDGSAFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR------ 128 9**************************************************************999...... PP TTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkk 101 weF+++ F++g+k ll++i+r+k cra_locus_3966_iso_3_len_1350_ver_3 129 ---WEFSNECFRRGEKGLLCDIQRRK 151 ...*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.6E-38	55	145	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.4E-58	57	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-35	58	150	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-32	61	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-20	61	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-20	99	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	100	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-20	112	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
XPDSAIRSVP VALSESASAG EVSITPPSHR GLEETMPPSP AERNGGESTV GDAPRSLPTP 60 FLTKTYQLVD DPTIDDIISW NDDGSAFIVW NPTEFARDLL PKYFKHNNFS SFVRQLNTYG 120 FRKLVPDRWE FSNECFRRGE KGLLCDIQRR KVVTPAAVSP ASPTLPPVVA VKAQAPLLTV 180 SPTDSGEEQV ISSTSSPGTV REPAPNASGT AELIGENERL KKENIQLNKE LSEMKSLCNN 240 IYVLMSSYAG NNNNNNNSSS GGGNNDQSAE SSQVMKALDL LPASRSRLCE EMMNTDDGGG 300 GEDRMDLDAR LFGVAIGMKR ARQNERAMAD DYRELQLQQP GTEVKSEPLD QLNGGNSQKT 360 SWCNKQCQRQ NSISRVCM

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

XPDSAIRSVP VALSESASAG EVSITPPSHR GLEETMPPSP AERNGGESTV GDAPRSLPTP  60
FLTKTYQLVD DPTIDDIISW NDDGSAFIVW NPTEFARDLL PKYFKHNNFS SFVRQLNTYG  120
FRKLVPDRWE FSNECFRRGE KGLLCDIQRR KVVTPAAVSP ASPTLPPVVA VKAQAPLLTV  180
SPTDSGEEQV ISSTSSPGTV REPAPNASGT AELIGENERL KKENIQLNKE LSEMKSLCNN  240
IYVLMSSYAG NNNNNNNSSS GGGNNDQSAE SSQVMKALDL LPASRSRLCE EMMNTDDGGG  300
GEDRMDLDAR LFGVAIGMKR ARQNERAMAD DYRELQLQQP GTEVKSEPLD QLNGGNSQKT  360
SWCNKQCQRQ NSISRVCM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-25	43	150	9	129	Heat shock factor protein 1
5d5v_B	1e-25	43	150	9	129	Heat shock factor protein 1
5d5v_D	1e-25	43	150	9	129	Heat shock factor protein 1
5hdg_A	6e-26	61	150	10	110	Heat shock factor protein 1
5hdn_A	6e-26	61	150	10	110	Heat shock factor protein 1
5hdn_B	6e-26	61	150	10	110	Heat shock factor protein 1
5hdn_C	6e-26	61	150	10	110	Heat shock factor protein 1
5hdn_D	6e-26	61	150	10	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076201.1	1e-147	heat stress transcription factor B-2a
Refseq	XP_011076202.1	1e-147	heat stress transcription factor B-2a
Swissprot	Q6Z9C8	8e-82	HFB2B_ORYSJ; Heat stress transcription factor B-2b
Swissprot	Q9SCW4	5e-83	HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBL	A0A068VLL8	1e-144	A0A068VLL8_COFCA; Uncharacterized protein
STRING	XP_009803855.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2182	24	60

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]