PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3966_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HSF | ||||||||
Protein Properties | Length: 211aa MW: 23332.7 Da PI: 4.4873 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 57.4 | 4.1e-18 | 26 | 75 | 2 | 51 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HH CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfa 51 Fl+k+y++++d++++++isw+++g++f+v++++efa+++LpkyFkh+n+ cra_locus_3966_iso_1_len_1080_ver_3 26 FLTKTYQLVDDPTIDDIISWNDDGSAFIVWNPTEFARDLLPKYFKHNNIY 75 9***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-18 | 20 | 74 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.5E-12 | 22 | 144 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.09E-16 | 23 | 74 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.3E-14 | 26 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-10 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-10 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPPSPAERNG GESTVGDAPR SLPTPFLTKT YQLVDDPTID DIISWNDDGS AFIVWNPTEF 60 ARDLLPKYFK HNNIYVLMSS YAGNNNNNNN SSSGGGNNDQ SAESSQVMKA LDLLPASRSR 120 LCEEMMNTDD GGGGEDRMDL DARLFGVAIG MKRARQNERA MADDYRELQL QQPGTEVKSE 180 PLDQLNGGNS QKTSWCNKQC QRQNSISRVC M |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110351.1 | 1e-38 | heat stress transcription factor B-2b-like | ||||
Refseq | XP_027161277.1 | 1e-38 | heat stress transcription factor B-2b-like | ||||
Refseq | XP_027161694.1 | 1e-38 | heat stress transcription factor B-2b-like | ||||
TrEMBL | A0A2R6RSV2 | 5e-39 | A0A2R6RSV2_ACTCH; Heat stress transcription factor B-2a like | ||||
STRING | XP_009603015.1 | 3e-37 | (Nicotiana tomentosiformis) |