PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3965_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 737aa MW: 83522.4 Da PI: 6.2622

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3965_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.9	3.3e-113	364	735	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 l++lL++cA+av++ d++ + lL+r+++++sp+gd ++Rla+yf++AL+arl + +++ly+ +++++ s cra_locus_3965_iso_5_len_3214_ver_3 364 LRSLLVQCAQAVATYDTRTSTDLLNRIRQHSSPYGDGVERLAHYFANALEARLGGIGTTLYAGFRARRIS---A 434 689***********************************************************999999...9 PP GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148 ++ l+ +++++ ++P+ k+s++ aN+ I + ++g++++HiiDf+i +G+QWp+L+q L+ R+egpp+lRiTgv+ cra_locus_3965_iso_5_len_3214_ver_3 435 ADILKGYQMYVTACPFKKVSNVFANRSIGKLAAGATTLHIIDFGILYGFQWPCLIQRLSMRKEGPPKLRITGVD 508 ********************************************************************** PP GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220 p++g +e+++etg rL++++++++vpfe+n+ +ak+++++++e++++ +gE l+Vn++ +l +++de+v cra_locus_3965_iso_5_len_3214_ver_3 509 LPQPGlrPAERVKETGLRLERYCQRFNVPFEYNA-IAKKWDTIQPEDFKIGEGELLVVNCMDRLANVPDETVME 581 ******************************.7********************************** PP GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +s+rd+vLkl+k+++P ++v + +ns+ F++rf eal ++s+lfd++e+++pre++er+ E+e+lgr++ cra_locus_3965_iso_5_len_3214_ver_3 582 NSPRDAVLKLIKKIRPALFVQGVINGTYNSPFFATRFREALFHFSSLFDMFETTVPRENKERTLFEQEILGRDA 655 ********************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 nv+aceg+er+er et+++W+ r +aGFk++pl+ +++k + + ++ + + ++v+e+s++l++gWk+r ++ cra_locus_3965_iso_5_len_3214_ver_3 656 LNVIACEGTERVERPETYKQWQVRNIRAGFKQLPLDRETMKRVVSKVASRYHKDFSVDEDSNWLLQGWKGRVVY 729 ***************************************99999999788**************** PP GRAS 369 svSaWr 374 + S+W+ cra_locus_3965_iso_5_len_3214_ver_3 730 AQSCWQ 735 ***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.655	338	715	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-110	364	735	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MDTLVQQYLS AQNVFDFKFR SRSVHQKQSH EVNEYNYNNR HGFEDSSEIS NGSSNSPVRE 60 SSPSGSGSDG HTSHEGDPHD PMLKYISEML MEEDDLENKP CMFHDCSALQ AAEKSFYDVL 120 NEPKNRYSEY NNADSPSQDS WRTSSSDVNS YVEPNWILDQ KGLDLESSLI QSSYVNHGYH 180 QSILDTSLQS LSSADSFFDA AREMDESLMS LLQASDSSVT NKLNVKSDSF TNGNNFPNID 240 QVSIGKTSRN VSVMVENEKT SFPDGSNMKK NRYRDDDSEE EEPRSKQLAG YSDEVPPMEQ 300 YDNVLLCPCL NPHLEQKPLI SSPDEASNTK GKDKSQQIDQ SKGSTKGRAR GGKKSSIRRE 360 VVDLRSLLVQ CAQAVATYDT RTSTDLLNRI RQHSSPYGDG VERLAHYFAN ALEARLGGIG 420 TTLYAGFRAR RISAADILKG YQMYVTACPF KKVSNVFANR SIGKLAAGAT TLHIIDFGIL 480 YGFQWPCLIQ RLSMRKEGPP KLRITGVDLP QPGLRPAERV KETGLRLERY CQRFNVPFEY 540 NAIAKKWDTI QPEDFKIGEG ELLVVNCMDR LANVPDETVM ENSPRDAVLK LIKKIRPALF 600 VQGVINGTYN SPFFATRFRE ALFHFSSLFD MFETTVPREN KERTLFEQEI LGRDALNVIA 660 CEGTERVERP ETYKQWQVRN IRAGFKQLPL DRETMKRVVS KVASRYHKDF SVDEDSNWLL 720 QGWKGRVVYA QSCWQPV

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MDTLVQQYLS AQNVFDFKFR SRSVHQKQSH EVNEYNYNNR HGFEDSSEIS NGSSNSPVRE  60
SSPSGSGSDG HTSHEGDPHD PMLKYISEML MEEDDLENKP CMFHDCSALQ AAEKSFYDVL  120
NEPKNRYSEY NNADSPSQDS WRTSSSDVNS YVEPNWILDQ KGLDLESSLI QSSYVNHGYH  180
QSILDTSLQS LSSADSFFDA AREMDESLMS LLQASDSSVT NKLNVKSDSF TNGNNFPNID  240
QVSIGKTSRN VSVMVENEKT SFPDGSNMKK NRYRDDDSEE EEPRSKQLAG YSDEVPPMEQ  300
YDNVLLCPCL NPHLEQKPLI SSPDEASNTK GKDKSQQIDQ SKGSTKGRAR GGKKSSIRRE  360
VVDLRSLLVQ CAQAVATYDT RTSTDLLNRI RQHSSPYGDG VERLAHYFAN ALEARLGGIG  420
TTLYAGFRAR RISAADILKG YQMYVTACPF KKVSNVFANR SIGKLAAGAT TLHIIDFGIL  480
YGFQWPCLIQ RLSMRKEGPP KLRITGVDLP QPGLRPAERV KETGLRLERY CQRFNVPFEY  540
NAIAKKWDTI QPEDFKIGEG ELLVVNCMDR LANVPDETVM ENSPRDAVLK LIKKIRPALF  600
VQGVINGTYN SPFFATRFRE ALFHFSSLFD MFETTVPREN KERTLFEQEI LGRDALNVIA  660
CEGTERVERP ETYKQWQVRN IRAGFKQLPL DRETMKRVVS KVASRYHKDF SVDEDSNWLL  720
QGWKGRVVYA QSCWQPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-43	368	735	8	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027109326.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068UKK8	0.0	A0A068UKK8_COFCA; Uncharacterized protein
STRING	Solyc01g100200.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]