PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3965_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 681aa MW: 77041.8 Da PI: 5.9485

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3965_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	205.9	2.3e-63	364	578	1	217
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 l++lL++cA+av++ d++ + lL+r+++++sp+gd ++Rla+yf++AL+arl + +++ly+ +++++ s cra_locus_3965_iso_4_len_3046_ver_3 364 LRSLLVQCAQAVATYDTRTSTDLLNRIRQHSSPYGDGVERLAHYFANALEARLGGIGTTLYAGFRARRIS---A 434 689***********************************************************999999...9 PP GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148 ++ l+ +++++ ++P+ k+s++ aN+ I + ++g++++HiiDf+i +G+QWp+L+q L+ R+egpp+lRiTgv+ cra_locus_3965_iso_4_len_3046_ver_3 435 ADILKGYQMYVTACPFKKVSNVFANRSIGKLAAGATTLHIIDFGILYGFQWPCLIQRLSMRKEGPPKLRITGVD 508 ********************************************************************** PP GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 p++g +e+++etg rL++++++++vpfe+n+ +ak+++++++e++++ +gE l+Vn++ +l +++de+ cra_locus_3965_iso_4_len_3046_ver_3 509 LPQPGlrPAERVKETGLRLERYCQRFNVPFEYNA-IAKKWDTIQPEDFKIGEGELLVVNCMDRLANVPDET 578 ******************************.7****************************99886 PP
2	GRAS	86.9	3.4e-27	577	679	272	374
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 e+++pre++er+ E+e+lgr++ nv+aceg+er+er et+++W+ r +aGFk++pl+ +++k + + ++ + cra_locus_3965_iso_4_len_3046_ver_3 577 ETTVPRENKERTLFEQEILGRDALNVIACEGTERVERPETYKQWQVRNIRAGFKQLPLDRETMKRVVSKVASRY 650 689*************************************************************99999999 PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++v+e+s++l++gWk+r +++ S+W+ cra_locus_3965_iso_4_len_3046_ver_3 651 HKDFSVDEDSNWLLQGWKGRVVYAQSCWQ 679 788***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.344	338	681	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-61	364	578	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MDTLVQQYLS AQNVFDFKFR SRSVHQKQSH EVNEYNYNNR HGFEDSSEIS NGSSNSPVRE 60 SSPSGSGSDG HTSHEGDPHD PMLKYISEML MEEDDLENKP CMFHDCSALQ AAEKSFYDVL 120 NEPKNRYSEY NNADSPSQDS WRTSSSDVNS YVEPNWILDQ KGLDLESSLI QSSYVNHGYH 180 QSILDTSLQS LSSADSFFDA AREMDESLMS LLQASDSSVT NKLNVKSDSF TNGNNFPNID 240 QVSIGKTSRN VSVMVENEKT SFPDGSNMKK NRYRDDDSEE EEPRSKQLAG YSDEVPPMEQ 300 YDNVLLCPCL NPHLEQKPLI SSPDEASNTK GKDKSQQIDQ SKGSTKGRAR GGKKSSIRRE 360 VVDLRSLLVQ CAQAVATYDT RTSTDLLNRI RQHSSPYGDG VERLAHYFAN ALEARLGGIG 420 TTLYAGFRAR RISAADILKG YQMYVTACPF KKVSNVFANR SIGKLAAGAT TLHIIDFGIL 480 YGFQWPCLIQ RLSMRKEGPP KLRITGVDLP QPGLRPAERV KETGLRLERY CQRFNVPFEY 540 NAIAKKWDTI QPEDFKIGEG ELLVVNCMDR LANVPDETTV PRENKERTLF EQEILGRDAL 600 NVIACEGTER VERPETYKQW QVRNIRAGFK QLPLDRETMK RVVSKVASRY HKDFSVDEDS 660 NWLLQGWKGR VVYAQSCWQP V

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MDTLVQQYLS AQNVFDFKFR SRSVHQKQSH EVNEYNYNNR HGFEDSSEIS NGSSNSPVRE  60
SSPSGSGSDG HTSHEGDPHD PMLKYISEML MEEDDLENKP CMFHDCSALQ AAEKSFYDVL  120
NEPKNRYSEY NNADSPSQDS WRTSSSDVNS YVEPNWILDQ KGLDLESSLI QSSYVNHGYH  180
QSILDTSLQS LSSADSFFDA AREMDESLMS LLQASDSSVT NKLNVKSDSF TNGNNFPNID  240
QVSIGKTSRN VSVMVENEKT SFPDGSNMKK NRYRDDDSEE EEPRSKQLAG YSDEVPPMEQ  300
YDNVLLCPCL NPHLEQKPLI SSPDEASNTK GKDKSQQIDQ SKGSTKGRAR GGKKSSIRRE  360
VVDLRSLLVQ CAQAVATYDT RTSTDLLNRI RQHSSPYGDG VERLAHYFAN ALEARLGGIG  420
TTLYAGFRAR RISAADILKG YQMYVTACPF KKVSNVFANR SIGKLAAGAT TLHIIDFGIL  480
YGFQWPCLIQ RLSMRKEGPP KLRITGVDLP QPGLRPAERV KETGLRLERY CQRFNVPFEY  540
NAIAKKWDTI QPEDFKIGEG ELLVVNCMDR LANVPDETTV PRENKERTLF EQEILGRDAL  600
NVIACEGTER VERPETYKQW QVRNIRAGFK QLPLDRETMK RVVSKVASRY HKDFSVDEDS  660
NWLLQGWKGR VVYAQSCWQP V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-30	370	680	24	379	Protein SCARECROW
5b3h_D	2e-30	370	680	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027109326.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-139	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068UKK8	0.0	A0A068UKK8_COFCA; Uncharacterized protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]