PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3965_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 208aa MW: 24335.6 Da PI: 7.9297 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 194.3 | 7.6e-60 | 2 | 206 | 169 | 374 |
GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 +++++vpfe+n+ +ak+++++++e++++ +gE l+Vn++ +l +++de+v +s+rd+vLkl+k+++P ++v cra_locus_3965_iso_1_len_1138_ver_3 2 CQRFNVPFEYNA-IAKKWDTIQPEDFKIGEGELLVVNCMDRLANVPDETVMENSPRDAVLKLIKKIRPALFVQG 74 6899********.7************************************************************ PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 + +ns+ F++rf eal ++s+lfd++e+++pre++er+ E+e+lgr++ nv+aceg+er+er et+++W+ cra_locus_3965_iso_1_len_1138_ver_3 75 VINGTYNSPFFATRFREALFHFSSLFDMFETTVPRENKERTLFEQEILGRDALNVIACEGTERVERPETYKQWQ 148 ************************************************************************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +aGFk++pl+ +++k + + ++ + + ++v+e+s++l++gWk+r +++ S+W+ cra_locus_3965_iso_1_len_1138_ver_3 149 VRNIRAGFKQLPLDRETMKRVVSKVASRYHKDFSVDEDSNWLLQGWKGRVVYAQSCWQ 206 *********************99999999788*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.19 | 1 | 186 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-57 | 2 | 206 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
XCQRFNVPFE YNAIAKKWDT IQPEDFKIGE GELLVVNCMD RLANVPDETV MENSPRDAVL 60 KLIKKIRPAL FVQGVINGTY NSPFFATRFR EALFHFSSLF DMFETTVPRE NKERTLFEQE 120 ILGRDALNVI ACEGTERVER PETYKQWQVR NIRAGFKQLP LDRETMKRVV SKVASRYHKD 180 FSVDEDSNWL LQGWKGRVVY AQSCWQPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 9e-14 | 5 | 208 | 212 | 421 | Protein SHORT-ROOT |
5b3h_E | 9e-14 | 5 | 208 | 212 | 421 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027109326.1 | 1e-112 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 2e-91 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A068UKK8 | 1e-111 | A0A068UKK8_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063769 | 1e-105 | (Solanum tuberosum) | ||||
STRING | Migut.D02076.1.p | 1e-105 | (Erythranthe guttata) |
Publications ? help Back to Top | |||
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