PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_39635_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 94aa MW: 10413.4 Da PI: 10.801 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.8 | 1.5e-09 | 56 | 92 | 1 | 32 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse....ng..krkrfs 32 + y+GVr++ +g+WvAeIr+p + g k +r + cra_locus_39635_iso_1_len_279_ver_3 56 CVYRGVRQRT-WGKWVAEIREPASnladAGlgKAARLW 92 68*****999.**********64424422253336666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-4 | 56 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-6 | 57 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-11 | 57 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.182 | 57 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
XRRNPEFVVE TLLKWKNLNS SNDDDGEGVS KMRKISAKGS KKGCMRGKGG PENSGCVYRG 60 VRQRTWGKWV AEIREPASNL ADAGLGKAAR LWLX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020267191.1 | 4e-29 | dehydration-responsive element-binding protein 2B-like | ||||
Swissprot | O80917 | 8e-24 | DRE2E_ARATH; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | A0A1S3ZEN7 | 2e-26 | A0A1S3ZEN7_TOBAC; uncharacterized protein LOC107785980 | ||||
TrEMBL | A0A1U7YJ50 | 2e-26 | A0A1U7YJ50_NICSY; uncharacterized protein LOC104248568 | ||||
TrEMBL | A0A287FUM8 | 3e-26 | A0A287FUM8_HORVV; Uncharacterized protein | ||||
STRING | XP_009803153.1 | 3e-27 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Publications ? help Back to Top | |||
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