PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_39038_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 25218.2 Da PI: 4.5705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 137 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg++ tae+Aa a ++a+ +l+g cra_locus_39038_iso_1_len_705_ver_3 137 RYRGVRRRP-WGKFAAEIRDP---KrKGSRIWLGTYETAEDAALAFDQAAFQLRG 187 59*******.**********8...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.947 | 137 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-36 | 137 | 201 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.58E-31 | 137 | 197 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-22 | 137 | 196 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-32 | 137 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-12 | 137 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
XLSSYNQTTI MYQSNAHNSD HLTFLPPLVD YQFLNNDFDF SEIFTDFNYA NYNYNNSTSD 60 NFSGFQFNEN CEEIISPNYA SEDLSDIILT DIFKDQDNYE DEVVAGEQEE ELITTPTSRG 120 GGGGGGCEQR SNEEWIRYRG VRRRPWGKFA AEIRDPKRKG SRIWLGTYET AEDAALAFDQ 180 AAFQLRGSRA RLNFPNLIGS ANAPVRVSPR RRSSSCHLRP Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-29 | 138 | 195 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q9LEM6 | 1e-135 | Q9LEM6_CATRO; AP2-domain DNA-binding protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |