PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3902_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 158aa MW: 17519 Da PI: 4.7082 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 63.3 | 5.1e-20 | 11 | 95 | 3 | 87 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrk.tingddllwalatlGfed 78 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+ k ekrk ti+++ +l al lGf + cra_locus_3902_iso_4_len_806_ver_3 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESK-KFVTEKRKgTIAPEHVLKALEVLGFGE 86 6899******************************************965.6666666659***************** PP NF-YB 79 yveplkvyl 87 y+e++ + cra_locus_3902_iso_4_len_806_ver_3 87 YIEEVYAAY 95 ***986544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-34 | 9 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.01E-32 | 12 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-18 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESKK 60 FVTEKRKGTI APEHVLKALE VLGFGEYIEE VYAAYEQHKI ETTDTVRGGK WSNGAAMSEE 120 EALAEQQRMF AEARARMNNG GATAPVPAPP KQPETEQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-30 | 12 | 134 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832678.1 | 2e-90 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-81 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A022RMH6 | 6e-89 | A0A022RMH6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D01587.1.p | 9e-90 | (Erythranthe guttata) |
Publications ? help Back to Top | |||
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