PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3849_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 32777.3 Da PI: 4.6893 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 18 | 70 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k cra_locus_3849_iso_3_len_1675_ver_3 18 KRRLSIDQVQALERIFEADNKLDPEKKIKLAQELGLQPRQVAIWFQNRRARWK 70 557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123 | 1.4e-39 | 17 | 107 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 kkrrls +qv++LE+ Fe+++kL+pe+K +la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ y++l+ cra_locus_3849_iso_3_len_1675_ver_3 17 KKRRLSIDQVQALERIFEADNKLDPEKKIKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYRLLKADYETLQL 90 9************************************************************************* PP HD-ZIP_I/II 76 enerLekeveeLreelk 92 + +++e+e+e L +el+ cra_locus_3849_iso_3_len_1675_ver_3 91 NFSKVEQEKEGLVSELR 107 ************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.7E-20 | 15 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-19 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 17 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.30E-17 | 17 | 73 | No hit | No description |
Pfam | PF00046 | 1.4E-17 | 18 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 23 | 70 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 43 | 52 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 52 | 68 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-13 | 72 | 113 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDEEEGMEEM NYCSIGKKRR LSIDQVQALE RIFEADNKLD PEKKIKLAQE LGLQPRQVAI 60 WFQNRRARWK TKQLERDYRL LKADYETLQL NFSKVEQEKE GLVSELRGLK EKLGEENAET 120 SHSAEKPSSS PHQSPQRNHK IYRNINLSEE MKRMKEFKEG LSSDDSDSSG ILNEDNYLNS 180 QPRLTSSCST FEEGGMDQYS VFPFSTPPLY HPLMDYSSRG VTMMKGYYEQ QQQQQQQQFG 240 KMEEDQNFFT ADDDEYDSCN MFQIDQTPFF WHFSDQRN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 72 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092729.1 | 1e-101 | homeobox-leucine zipper protein ATHB-16-like | ||||
Refseq | XP_027149661.1 | 1e-101 | homeobox-leucine zipper protein ATHB-16-like | ||||
TrEMBL | A0A068TYI6 | 7e-93 | A0A068TYI6_COFCA; Uncharacterized protein |