PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3849_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 277aa    MW: 32649.2 Da    PI: 4.6893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3849_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-201870456
                                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                         +++++ +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k
  cra_locus_3849_iso_1_len_1672_ver_3 18 KRRLSIDQVQALERIFEADNKLDPEKKIKLAQELGLQPRQVAIWFQNRRARWK 70
                                         557899**********************************************9 PP
2HD-ZIP_I/II1231.4e-3917107292
                          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                                          kkrrls +qv++LE+ Fe+++kL+pe+K +la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ y++l+ 
  cra_locus_3849_iso_1_len_1672_ver_3  17 KKRRLSIDQVQALERIFEADNKLDPEKKIKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYRLLKADYETLQL 90 
                                          9************************************************************************* PP

                          HD-ZIP_I/II  76 enerLekeveeLreelk 92 
                                          + +++e+e+e L +el+
  cra_locus_3849_iso_1_len_1672_ver_3  91 NFSKVEQEKEGLVSELR 107
                                          ************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.7E-201576IPR001356Homeobox domain
SuperFamilySSF466892.01E-191674IPR009057Homeodomain-like
PROSITE profilePS5007116.9891772IPR001356Homeobox domain
CDDcd000863.26E-171773No hitNo description
PfamPF000461.4E-171870IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-202370IPR009057Homeodomain-like
PRINTSPR000311.2E-54352IPR000047Helix-turn-helix motif
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PRINTSPR000311.2E-55268IPR000047Helix-turn-helix motif
PfamPF021831.0E-1372113IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEEEGMEEM NYCSIGKKRR LSIDQVQALE RIFEADNKLD PEKKIKLAQE LGLQPRQVAI  60
WFQNRRARWK TKQLERDYRL LKADYETLQL NFSKVEQEKE GLVSELRGLK EKLGEENAET  120
SHSAEKPSSS PHQSPQRNHK IYRNINLSEE MKRMKEFKEG LSSDDSDSSG ILNEDNYLNS  180
QPRLTSSCST FEEGGMDQYS VFPFSTPPLY HPLMDYSSRG VTMMKGYYEQ QQQQQQQFGK  240
MEEDQNFFTA DDDEYDSCNM FQIDQTPFFW HFSDQRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092729.11e-101homeobox-leucine zipper protein ATHB-16-like
RefseqXP_027149661.11e-101homeobox-leucine zipper protein ATHB-16-like
TrEMBLA0A068TYI65e-93A0A068TYI6_COFCA; Uncharacterized protein