PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_38360_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27547.4 Da PI: 9.3362 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.2 | 1.7e-14 | 95 | 146 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ cra_locus_38360_iso_2_len_719_ver_3 95 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 146 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-13 | 93 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 93 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.08E-13 | 93 | 150 | No hit | No description |
PROSITE profile | PS50888 | 15.815 | 94 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-12 | 95 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-10 | 100 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
XDFYNLWDLE NLGLFGDNII TEDDNQKLNL ESLDQISLDQ QGQYGINWDS STNSSPDGSF 60 VGGGDRFPAA VANQIGRRKR RRTKSFKNKE EMENQRMTHI AVERNRRRQM NDYLAVLRSL 120 MPPSYAQRGD QASIVGGAIN FVKELEQLLQ FLQSHKQKQS THSKLFTNFF TYPQYSTSSP 180 SQQHHRTTTA LADVDCMAEK PSRLADIEVT MAETHANIKL LTRRRPKQLL TLVTGFHSLS 240 X |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 81 | RKRRR |
2 | 77 | 82 | RKRRRT |
3 | 95 | 106 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077975.1 | 6e-90 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 2e-51 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A068U014 | 8e-88 | A0A068U014_COFCA; Uncharacterized protein | ||||
STRING | XP_010272971.1 | 5e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1996 | 24 | 62 |
Publications ? help Back to Top | |||
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