PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_38360_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20936.3 Da PI: 11.1447 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.8 | 1.1e-14 | 38 | 89 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ cra_locus_38360_iso_1_len_549_ver_3 38 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 89 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 36 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.52E-11 | 36 | 93 | No hit | No description |
SuperFamily | SSF47459 | 1.16E-17 | 36 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.815 | 37 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-12 | 38 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-10 | 43 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
XGGGGGGDRF PAAVANQIGR RKRRRTKSFK NKEEMENQRM THIAVERNRR RQMNDYLAVL 60 RSLMPPSYAQ RGDQASIVGG AINFVKELEQ LLQFLQSHKQ KQSTHSKLFT NFFTYPQYST 120 SSPSQQHHRT TTALADVDCM AEKPSRLADI EVTMAETHAN IKLLTRRRPK QLLTLVTGFH 180 SLSX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 24 | RKRRR |
2 | 20 | 25 | RKRRRT |
3 | 38 | 49 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077975.1 | 4e-91 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 5e-52 | BH096_ARATH; Transcription factor bHLH96 | ||||
Swissprot | Q9SK91 | 4e-52 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A068U014 | 1e-88 | A0A068U014_COFCA; Uncharacterized protein | ||||
STRING | EMJ09392 | 7e-70 | (Prunus persica) |
Publications ? help Back to Top | |||
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