PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3791_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 473aa MW: 51967.5 Da PI: 9.9888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3791_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	240	262	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L+ H + H cra_locus_3791_iso_2_len_1705_ver_3 240 TCHKCGEQFGKWEVLEAHHLSkH 262 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	241	262	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.93E-22	264	472	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.1E-7	264	465	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGRNLRRNGK EKEXWPLKRD KLFEEKEKIL CFRRRMKEGK SIPTVWFSLK KSLHCKTEPS 60 EVHDPKTRKQ LSSILTKKTG GGRSGCSRSI ANLKDVIHGS SKRHMEKPPS CSPRSIGSSE 120 FLNPITHEVI LSNSRCELKI TSFNGFPEGG GGGGGAACAG GGGGDSTFVG TLRPGTPGPG 180 GHPTMHYFNP SYRHHHPSST PPRKTSSSSA LLLGDREISG LPSKPRPSLE TDANGTSSVT 240 CHKCGEQFGK WEVLEAHHLS KHAVTELAEG DSSRKIVEII CRSSWLKSET QCGRIERVLK 300 VHNMQKTLAR FEEYREMVKI KASKLSKKHP RCIADGNELL RFYGTTVACS LGMNGSSNLC 360 ISERCCVCRI IRNGFSTKKE LKGGIGVFTT STSGRAFESI EIYEVDPSIR KALIVCRVIA 420 GRVHKPLENI QEIAGQTGFD SLAGKVGLYS NIEELYLLNP KALLPCFVVI CKN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGRNLRRNGK EKEXWPLKRD KLFEEKEKIL CFRRRMKEGK SIPTVWFSLK KSLHCKTEPS  60
EVHDPKTRKQ LSSILTKKTG GGRSGCSRSI ANLKDVIHGS SKRHMEKPPS CSPRSIGSSE  120
FLNPITHEVI LSNSRCELKI TSFNGFPEGG GGGGGAACAG GGGGDSTFVG TLRPGTPGPG  180
GHPTMHYFNP SYRHHHPSST PPRKTSSSSA LLLGDREISG LPSKPRPSLE TDANGTSSVT  240
CHKCGEQFGK WEVLEAHHLS KHAVTELAEG DSSRKIVEII CRSSWLKSET QCGRIERVLK  300
VHNMQKTLAR FEEYREMVKI KASKLSKKHP RCIADGNELL RFYGTTVACS LGMNGSSNLC  360
ISERCCVCRI IRNGFSTKKE LKGGIGVFTT STSGRAFESI EIYEVDPSIR KALIVCRVIA  420
GRVHKPLENI QEIAGQTGFD SLAGKVGLYS NIEELYLLNP KALLPCFVVI CKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606656.1	0.0	uncharacterized protein LOC110610892
TrEMBL	A0A2C9W6P3	0.0	A0A2C9W6P3_MANES; Uncharacterized protein
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35