PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3760_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 364aa    MW: 39706.6 Da    PI: 10.1448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3760_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31292349359
                                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  cra_locus_3760_iso_1_len_1647_ver_3 292 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 349
                                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-17239288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33278349IPR003657WRKY domain
PROSITE profilePS5081130.733285351IPR003657WRKY domain
SuperFamilySSF1182903.92E-27287350IPR003657WRKY domain
SMARTSM007741.2E-37290350IPR003657WRKY domain
PfamPF031063.4E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAVELMTGFR NDGFTSKMED NGAVQEAATA GLQSVEKLIR LLSQSQSQSX SHQQQIYKDP  60
SSKSSATEYQ AVADAAVNKF KKFISLLDRT RTGHARFRRG PVTNPTQQQL QKPQISSPPS  120
SSSLNQPSTN LIQVQPMEEE KEKLTKSSSR IYCPTPIQGL PPLPHNHHQL VKNVPTERKE  180
SSTTINFAAA SPVNSFMSSL TGDTDSLQPS MTSSGFQITN LSSHVSSAGK PPLSTSSFKR  240
KCSSMDDAAV KCGGGGASSG SRCHCPKKRK SRMKRVIRVP AISMKMADIP PDDYSWRKYG  300
QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPTMLIV TYEGEHNHSH SATEAPAALV  360
LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21278348271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092449.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A068TYC90.0A0A068TYC9_COFCA; Uncharacterized protein
STRINGXP_009604893.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479