PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3737_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 160aa MW: 18275.4 Da PI: 4.6193 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.6 | 2.1e-10 | 16 | 87 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 Wt +e +L++ + +e + ++ + ++W+ v +++ + ++rs +qCk+kw +l +ykk+k +e++ + cra_locus_3737_iso_2_len_987_ver_3 16 WTVSECVTLVNEISAIEGEWLQSVASFQKWQLVVENCNALEINRSLNQCKKKWAELLAEYKKVKPWEEGYwS 87 9*****************************************************************997644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.5E-9 | 15 | 84 | No hit | No description |
PROSITE profile | PS50090 | 6.4 | 16 | 72 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MERGSRCTRS QAAPDWTVSE CVTLVNEISA IEGEWLQSVA SFQKWQLVVE NCNALEINRS 60 LNQCKKKWAE LLAEYKKVKP WEEGYWSCDS NEREELGLPE GFDRELFKAI DRYVKKKGGD 120 DNAEGPETDP ESDSQTPANT NKFVWKTGIP TMSLLISEHK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090742.1 | 4e-57 | uncharacterized protein LOC113711750 | ||||
Refseq | XP_027090743.1 | 4e-57 | uncharacterized protein LOC113711750 | ||||
Refseq | XP_027149092.1 | 4e-57 | uncharacterized protein LOC113749527 | ||||
Refseq | XP_027149093.1 | 4e-57 | uncharacterized protein LOC113749527 | ||||
TrEMBL | A0A068VBT6 | 2e-54 | A0A068VBT6_COFCA; Uncharacterized protein | ||||
STRING | Solyc08g069160.2.1 | 7e-44 | (Solanum lycopersicum) |