PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_37309_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 191aa    MW: 21583.8 Da    PI: 10.3573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_37309_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31104162159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+++r ++d++vv++tYeg H h+
  cra_locus_37309_iso_1_len_569_ver_3 104 LDDGYKWRKYGQKSVKNSSHPRSYYRCTHHTCNVKKQIQRLSKDTSVVVTTYEGIHSHP 162
                                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-3291162IPR003657WRKY domain
SuperFamilySSF1182901.05E-2796163IPR003657WRKY domain
PROSITE profilePS5081127.93399164IPR003657WRKY domain
SMARTSM007744.7E-36104163IPR003657WRKY domain
PfamPF031066.6E-25105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
XFFNPSSSPP LLTPPPTTTS LINQPTMQIS DIDWATIFSS TSSLNNGGAA TTAEQKPRNP  60
PTSHHHGHNM MMKLHKAKCG GGKSSKKYVT PRVAFHTRST EDILDDGYKW RKYGQKSVKN  120
SSHPRSYYRC THHTCNVKKQ IQRLSKDTSV VVTTYEGIHS HPCEKLMETL TPLLKQLQFL  180
SRFXKSSLHY X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2492161271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182489.12e-71probable WRKY transcription factor 43
SwissprotQ8VWQ47e-58WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A068UUY25e-70A0A068UUY2_COFCA; Uncharacterized protein
STRINGXP_009764262.13e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433