PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_37113_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 94aa    MW: 10343.6 Da    PI: 10.4678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_37113_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-182271255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         gy GVr +k +g+Wv+eIr+p   gk++r++lg++ t+++Aa+a++ a+  l+g
  cra_locus_37113_iso_1_len_458_ver_3 22 GYVGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPQMAAAAYDVAAFHLKG 71
                                         8*****999.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-222280IPR016177DNA-binding domain
PROSITE profilePS5103222.0362279IPR001471AP2/ERF domain
SMARTSM003801.0E-332285IPR001471AP2/ERF domain
PfamPF008472.2E-122271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-312380IPR001471AP2/ERF domain
PRINTSPR003673.6E-122334IPR001471AP2/ERF domain
CDDcd000187.32E-192681No hitNo description
PRINTSPR003673.6E-126181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MMSHKIGNEH ELREGGGGGE AGYVGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPQMAAA  60
AYDVAAFHLK GSKARLNFPD LVQTLPKPLS SSAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-182384668ATERF1
3gcc_A2e-182384668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444552.11e-37PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I28e-38ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D3APU95e-36A0A0D3APU9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D9C05e-36A0A3P6D9C0_BRAOL; Uncharacterized protein
STRINGBo2g072910.18e-37(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165