PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 430aa    MW: 46448.8 Da    PI: 9.6922
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.2e-23287349163
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_9_len_1960_ver_3 287 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 349
                                          89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.2E-25135268No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-17282347No hitNo description
SMARTSM003388.6E-22287351IPR004827Basic-leucine zipper domain
PfamPF001705.5E-21287349IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472289352IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11290346No hitNo description
CDDcd147021.89E-19292340No hitNo description
PROSITE patternPS000360294309IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGSSEETKSS KPEKSSSPAP EQSNVHVYPD WAAMQVISLH MFSVFLLLHF LACXSKXYPV  60
IIMLYKEXSL ICLLLSSEGI LWSPSCXXXX XXXXXXXXXX XXXXXXXXSP GATEAIAASP  120
LSIDTPTKSS ANGSQGLMNK LRGFDGLAMS IGNGNTDSAD GGTDHGISQS GDTEGSSDGS  180
NGTTSKAGQK NKKRSREGTP ANDRERKSLT PSSPSAAVNT NGSSEKAMRA SKVPAAATEK  240
VMGAVLSPNM TTASELRNPS AANAKTSPAK VPNPVLLFRV KAWLQNEREL KRERRKQSNR  300
ESARRSRLRK QAETEELAKK VQTLTAENMT LRSEINKLTE NSEHLRHENA ALLDKLKNAR  360
VMQAGEMNKY DELHRQPTGT ADLLARVNNS GSTDKSNEEG GGDVFENRNS GTKLHQLLDA  420
SPRADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309RRSRLRK
2303310RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108499.11e-145common plant regulatory factor 1-like isoform X5
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGVIT_15s0046g01440.t011e-126(Vitis vinifera)