PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3631_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 455aa MW: 48680.3 Da PI: 9.8498 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.8 | 1e-22 | 284 | 346 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+ cra_locus_3631_iso_8_len_2035_ver_3 284 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 346 89********************************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.3E-35 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 5.8E-25 | 132 | 265 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-17 | 279 | 344 | No hit | No description |
Pfam | PF00170 | 6.0E-21 | 284 | 346 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.6E-22 | 284 | 348 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.472 | 286 | 349 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.63E-11 | 287 | 343 | No hit | No description |
CDD | cd14702 | 2.54E-21 | 289 | 337 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 291 | 306 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MGSSEETKSS KPEKSSSPAP EQSNVHVYPD WAAMQAYYGP RVAVPPYFSS AVASGHPPHP 60 YMWGPPQPMM PPYGTPYAAI YAHGGVYTHP GVPLGSHANA HAGATSPGAT EAIAASPLSI 120 DTPTKSSANG SQGLMNKLRG FDGLAMSIGN GNTDSADGGT DHGISQSGDT EGSSDGSNGT 180 TSKAGQKNKK RSREGTPAND RERKSLTPSS PSAAVNTNGS SEKAMRASKV PAAATEKVMG 240 AVLSPNMTTA SELRNPSAAN AKTSPAKVPN PVLLFRVKAW LQNERELKRE RRKQSNRESA 300 RRSRLRKQAE TEELAKKVQT LTAENMTLRS EINKLTENSE HLRHENAALL VXPCRVXYYF 360 IFWLNNSXVA DPHVRISQDK LKNARVMQAG EMNKYDELHR QPTGTADLLA RVNNSGSTDK 420 SNEEGGGDVF ENRNSGTKLH QLLDASPRAD AVAAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 306 | RRSRLRK |
2 | 300 | 307 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108499.1 | 0.0 | common plant regulatory factor 1-like isoform X5 | ||||
Swissprot | Q99089 | 1e-134 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | Q9XHQ6 | 0.0 | Q9XHQ6_CATRO; G-box binding protein 1 | ||||
STRING | XP_009765847.1 | 1e-170 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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