PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 460aa    MW: 49079.1 Da    PI: 9.8959
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.36.6e-08284309126
                                          XXXXCHHHCHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKka 26 
                                          e+elkrerrkq+NRe+ArrsR+RK+ 
  cra_locus_3631_iso_7_len_2051_ver_3 284 ERELKRERRKQSNRESARRSRLRKQV 309
                                          89**********************95 PP
2bZIP_127.85.4e-093423792663
                                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1  26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_7_len_2051_ver_3 342 AETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 379
                                          789******************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-35193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.9E-25132265No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-16279308No hitNo description
SMARTSM003382.5E-10284381IPR004827Basic-leucine zipper domain
CDDcd147024.74E-15289370No hitNo description
PROSITE patternPS000360291306IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.0E-16342377No hitNo description
PfamPF001704.2E-7342379IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGSSEETKSS KPEKSSSPAP EQSNVHVYPD WAAMQAYYGP RVAVPPYFSS AVASGHPPHP  60
YMWGPPQPMM PPYGTPYAAI YAHGGVYTHP GVPLGSHANA HAGATSPGAT EAIAASPLSI  120
DTPTKSSANG SQGLMNKLRG FDGLAMSIGN GNTDSADGGT DHGISQSGDT EGSSDGSNGT  180
TSKAGQKNKK RSREGTPAND RERKSLTPSS PSAAVNTNGS SEKAMRASKV PAAATEKVMG  240
AVLSPNMTTA SELRNPSAAN AKTSPAKVPN PVLLFRVKAW LQNERELKRE RRKQSNRESA  300
RRSRLRKQVR KRISDNLTQS XIISCVILSV NKDXFLTFPC MAETEELAKK VQTLTAENMT  360
LRSEINKLTE NSEHLRHENA ALLDKLKNAR VMQAGEMNKY DELHRQPTGT ADLLARVNNS  420
GSTDKSNEEG GGDVFENRNS GTKLHQLLDA SPRADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300306RRSRLRK
2300307RRSRLRKQ
3300311RRSRLRKQVRKR
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108499.10.0common plant regulatory factor 1-like isoform X5
SwissprotQ990891e-133CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGXP_009765847.11e-169(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]