PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 489aa    MW: 51665.7 Da    PI: 8.4687
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.71.1e-22346408163
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_6_len_2136_ver_3 346 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 408
                                          89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-35193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.7E-25132265No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-16344406No hitNo description
PfamPF001706.6E-21346408IPR004827Basic-leucine zipper domain
SMARTSM003388.6E-22346410IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472348411IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.0E-11349405No hitNo description
CDDcd147027.18E-22351399No hitNo description
PROSITE patternPS000360353368IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGSSEETKSS KPEKSSSPAP EQSNVHVYPD WAAMQAYYGP RVAVPPYFSS AVASGHPPHP  60
YMWGPPQPMM PPYGTPYAAI YAHGGVYTHP GVPLGSHANA HAGATSPGAT EAIAASPLSI  120
DTPTKSSANG SQGLMNKLRG FDGLAMSIGN GNTDSADGGT DHGISQSGDT EGSSDGSNGT  180
TSKAGQKNKK RSREGTPAND RERKSLTPSS PSAAVNTNGS SEKAMRASKV PAAATEKVMG  240
AVLSPNMTTA SELRNPSAAN AKTSPAKVSQ SCSSLPGETW LQVCATGVLV CAPFQSSALG  300
GFIGQGNVVV AXLLHISXAP ILXLCHASFG SEMRLCLCWI FCDQNERELK RERRKQSNRE  360
SARRSRLRKQ AETEELAKKV QTLTAENMTL RSEINKLTEN SEHLRHENAA LLDKLKNARV  420
MQAGEMNKYD ELHRQPTGTA DLLARVNNSG STDKSNEEGG GDVFENRNSG TKLHQLLDAS  480
PRADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362368RRSRLRK
2362369RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501041.11e-163PREDICTED: transcriptional activator TAF-1
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGXP_009765847.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447