PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3631_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17862 Da PI: 8.9015 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 74.9 | 1.1e-23 | 14 | 76 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+ cra_locus_3631_iso_5_len_1245_ver_3 14 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 76 89********************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-16 | 12 | 74 | No hit | No description |
Pfam | PF00170 | 5.7E-22 | 14 | 76 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.6E-22 | 14 | 78 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.472 | 16 | 79 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.25E-12 | 17 | 73 | No hit | No description |
CDD | cd14702 | 1.15E-15 | 19 | 67 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 21 | 36 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MRLCLCWIFC DQNERELKRE RRKQSNRESA RRSRLRKQAE TEELAKKVQT LTAENMTLRS 60 EINKLTENSE HLRHENAALL DKLKNARVMQ AGEMNKYDEL HRQPTGTADL LARVNNSGST 120 DKSNEEGGGD VFENRNSGTK LHQLLDASPR ADAVAAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | RRSRLRK |
2 | 30 | 37 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108498.1 | 4e-64 | transcriptional activator TAF-1-like isoform X4 | ||||
Refseq | XP_027108499.1 | 2e-63 | common plant regulatory factor 1-like isoform X5 | ||||
Swissprot | P42776 | 5e-44 | GBF3_ARATH; G-box-binding factor 3 | ||||
Swissprot | Q99089 | 6e-44 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | Q9XHQ6 | 6e-95 | Q9XHQ6_CATRO; G-box binding protein 1 | ||||
STRING | XP_009765847.1 | 2e-59 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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