PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 458aa    MW: 48705.4 Da    PI: 9.1246
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.81e-22315377163
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_4_len_2045_ver_3 315 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 377
                                          89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-35193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-11132183No hitNo description
PfamPF165963.3E-7217296No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-17310375No hitNo description
SMARTSM003388.6E-22315379IPR004827Basic-leucine zipper domain
PfamPF001706.0E-21315377IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472317380IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-11318374No hitNo description
CDDcd147021.51E-21320368No hitNo description
PROSITE patternPS000360322337IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGSSEETKSS KPEKSSSPAP EQSNVHVYPD WAAMQAYYGP RVAVPPYFSS AVASGHPPHP  60
YMWGPPQPMM PPYGTPYAAI YAHGGVYTHP GVPLGSHANA HAGATSPGAT EAIAASPLSI  120
DTPTKSSANG SQGLMNKLRG FDGLAMSIGN GNTDSADGGT DHGISQSGDT EGSSDGSNGT  180
TSKEGFSYDK ADDAFSDXSL NFPVCLNCNG ILLXAGQKNK KRSREGTPAN DRERKSLTPS  240
SPSAAVNTNG SSEKAMRASK VPAAATEKVM GAVLSPNMTT ASELRNPSAA NAKTSPAKVP  300
NPVLLFRVKA WLQNERELKR ERRKQSNRES ARRSRLRKQA ETEELAKKVQ TLTAENMTLR  360
SEINKLTENS EHLRHENAAL LDKLKNARVM QAGEMNKYDE LHRQPTGTAD LLARVNNSGS  420
TDKSNEEGGG DVFENRNSGT KLHQLLDASP RADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331337RRSRLRK
2331338RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108499.10.0common plant regulatory factor 1-like isoform X5
SwissprotQ990891e-133CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGXP_009765847.11e-171(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]