PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 442aa    MW: 47375.2 Da    PI: 9.9336
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.6e-23299361163
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_3_len_1648_ver_3 299 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 361
                                          89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.6E-3135108IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.5E-25147280No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-17294359No hitNo description
PfamPF001705.7E-21299361IPR004827Basic-leucine zipper domain
SMARTSM003388.6E-22299363IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472301364IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-12302358No hitNo description
CDDcd147021.04E-21304352No hitNo description
PROSITE patternPS000360306321IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
XFKSSKVXSI PVHPYFSWFY VLHPTSIDGS FLLDREQSNV HVYPDWAAMQ AYYGPRVAVP  60
PYFSSAVASG HPPHPYMWGP PQPMMPPYGT PYAAIYAHGG VYTHPGVPLG SHANAHAGAT  120
SPGATEAIAA SPLSIDTPTK SSANGSQGLM NKLRGFDGLA MSIGNGNTDS ADGGTDHGIS  180
QSGDTEGSSD GSNGTTSKAG QKNKKRSREG TPANDRERKS LTPSSPSAAV NTNGSSEKAM  240
RASKVPAAAT EKVMGAVLSP NMTTASELRN PSAANAKTSP AKVPNPVLLF RVKAWLQNER  300
ELKRERRKQS NRESARRSRL RKQAETEELA KKVQTLTAEN MTLRSEINKL TENSEHLRHE  360
NAALLDKLKN ARVMQAGEMN KYDELHRQPT GTADLLARVN NSGSTDKSNE EGGGDVFENR  420
NSGTKLHQLL DASPRADAVA AG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321RRSRLRK
2315322RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108499.10.0common plant regulatory factor 1-like isoform X5
SwissprotQ990891e-136CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGXP_009765847.11e-165(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]