PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 338aa    MW: 35925.6 Da    PI: 10.3605
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.5e-23195257163
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_2_len_1684_ver_3 195 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 257
                                          89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.1E-2543176No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-17190255No hitNo description
SMARTSM003388.6E-22195259IPR004827Basic-leucine zipper domain
PfamPF001703.8E-21195257IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472197260IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-11198254No hitNo description
CDDcd147021.81E-18200248No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGSSEETKSS KPEKSSSPGA TEAIAASPLS IDTPTKSSAN GSQGLMNKLR GFDGLAMSIG  60
NGNTDSADGG TDHGISQSGD TEGSSDGSNG TTSKAGQKNK KRSREGTPAN DRERKSLTPS  120
SPSAAVNTNG SSEKAMRASK VPAAATEKVM GAVLSPNMTT ASELRNPSAA NAKTSPAKVP  180
NPVLLFRVKA WLQNERELKR ERRKQSNRES ARRSRLRKQA ETEELAKKVQ TLTAENMTLR  240
SEINKLTENS EHLRHENAAL LDKLKNARVM QAGEMNKYDE LHRQPTGTAD LLARVNNSGS  300
TDKSNEEGGG DVFENRNSGT KLHQLLDASP RADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217RRSRLRK
2211218RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108496.11e-138transcriptional activator TAF-1-like isoform X3
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGVIT_15s0046g01440.t011e-122(Vitis vinifera)