PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3631_iso_10
Common NameGBF1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 427aa    MW: 45317.1 Da    PI: 9.9085
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3631_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.1e-23284346163
                                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                           e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++ l+ e+
  cra_locus_3631_iso_10_len_1951_ver_3 284 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQTLTAENMTLRSEINKLTENSEHLRHEN 346
                                           89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-35193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.1E-25132265No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-17279344No hitNo description
PfamPF001705.4E-21284346IPR004827Basic-leucine zipper domain
SMARTSM003388.6E-22284348IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472286349IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11287343No hitNo description
CDDcd147024.01E-21289337No hitNo description
PROSITE patternPS000360291306IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGSSEETKSS KPEKSSSPAP EQSNVHVYPD WAAMQAYYGP RVAVPPYFSS AVASGHPPHP  60
YMWGPPQPMM PPYGTPYAAI YAHGGVYTHP GVPLGSHANA HAGATSPGAT EAIAASPLSI  120
DTPTKSSANG SQGLMNKLRG FDGLAMSIGN GNTDSADGGT DHGISQSGDT EGSSDGSNGT  180
TSKAGQKNKK RSREGTPAND RERKSLTPSS PSAAVNTNGS SEKAMRASKV PAAATEKVMG  240
AVLSPNMTTA SELRNPSAAN AKTSPAKVPN PVLLFRVKAW LQNERELKRE RRKQSNRESA  300
RRSRLRKQAE TEELAKKVQT LTAENMTLRS EINKLTENSE HLRHENAALL DKLKNARVMQ  360
AGEMNKYDEL HRQPTGTADL LARVNNSGST DKSNEEGGGD VFENRNSGTK LHQLLDASPR  420
ADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300306RRSRLRK
2300307RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108499.10.0common plant regulatory factor 1-like isoform X5
SwissprotQ990891e-140CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLQ9XHQ60.0Q9XHQ6_CATRO; G-box binding protein 1
STRINGXP_009765847.11e-176(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Sib
    Catharanthus roseus G-box binding factors 1 and 2 act as repressors of strictosidine synthase gene expression in cell cultures.
    Plant Mol. Biol., 2001. 45(4): p. 477-88
    [PMID:11352466]
  2. Sib
    Plant bZIP G-box binding factors. Modular structure and activation mechanisms.
    Eur. J. Biochem., 2001. 268(22): p. 5655-66
    [PMID:11722549]
  3. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  4. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]