PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3595_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 189aa    MW: 20971.8 Da    PI: 4.8106
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3595_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-153771999
                                         -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                                   B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                                         p+ ++   +g+   + ++ l+d+ g+ W+v +  +k +++ +l +GW+ Fv +n L+ gDfvvF+  ++++f  +v
  cra_locus_3595_iso_4_len_1033_ver_3  3 PRAYTLYKKGN--LPAKVFLRDRYGNLWTVDV--EKIGNELFLVGGWSTFVLENSLELGDFVVFEPGSHNTF--NV 72
                                         55555333444..7789***************..*******************************6544555..99 PP

                                         EEE-S CS
                                   B3 95 kvfrk 99
                                         k++ k
  cra_locus_3595_iso_4_len_1033_ver_3 73 KILGK 77
                                         98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-16178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.494178IPR003340B3 DNA binding domain
SMARTSM010199.9E-6278IPR003340B3 DNA binding domain
CDDcd100172.02E-12275No hitNo description
SuperFamilySSF1019361.29E-17278IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-13276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
NIPRAYTLYK KGNLPAKVFL RDRYGNLWTV DVEKIGNELF LVGGWSTFVL ENSLELGDFV  60
VFEPGSHNTF NVKILGKNSV EKVGLGVCKS KIKIEEEESA EEEDGEEEEE SAGSAEEEDE  120
EEDIVILSSG PGESSGRNKT LKPSISAAKI SKAGCRISPP KNPHFLAKMR PRRRDELVGL  180
LHCALIFMF