PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3595_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 263aa    MW: 29835.8 Da    PI: 6.3176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3595_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.5e-153771999
                                        -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                                  B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                                        p+ ++   +g+   + ++ l+d+ g+ W+v +  +k +++ +l +GW+ Fv +n L+ gDfvvF+  ++++f  +vk
  cra_locus_3595_iso_2_len_908_ver_3  3 PRAYTLYKKGN--LPAKVFLRDRYGNLWTVDV--EKIGNELFLVGGWSTFVLENSLELGDFVVFEPGSHNTF--NVK 73
                                        55555333444..7789***************..*******************************6544555..999 PP

                                        EE-S CS
                                  B3 96 vfrk 99
                                        ++ k
  cra_locus_3595_iso_2_len_908_ver_3 74 ILGK 77
                                        8866 PP
2B334.63.4e-111762571396
                                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                         ++ l +p + +++++++   + + +l+d++gr+W+ kl+ +k + r++  +GW + ++ n+++e D+++ ++++r
  cra_locus_3595_iso_2_len_908_ver_3 176 RDELFVPFDVINDYNLD--LPSKTILRDSEGREWTTKLTPWKDG-RIWYYGGWASLCRVNRVNEADTCLCEFVKR 247
                                         56677788888888777..5668999************888886.566778********************9998 PP

                                         .SEE..EEEE CS
                                  B3  88 .sefelvvkv 96 
                                           +++++++v
  cra_locus_3595_iso_2_len_908_ver_3 248 kGKKKYHIQV 257
                                         7888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-16178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.494178IPR003340B3 DNA binding domain
CDDcd100176.75E-12275No hitNo description
SMARTSM010199.9E-6278IPR003340B3 DNA binding domain
PfamPF023628.5E-13276IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-16160261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17160261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.884164263IPR003340B3 DNA binding domain
CDDcd100171.36E-7165257No hitNo description
SMARTSM010193.7E-5167263IPR003340B3 DNA binding domain
PfamPF023621.4E-8176256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
NIPRAYTLYK KGNLPAKVFL RDRYGNLWTV DVEKIGNELF LVGGWSTFVL ENSLELGDFV  60
VFEPGSHNTF NVKILGKNSV EKVGLGVCKS KIKIEEEESA EEEDGEEEEE SAGSAEEEDE  120
EEDIVILSCK SGPGESSGRN KTLKPSISAA KISKAGCRIS PPKNPHFLAK MRPRRRDELF  180
VPFDVINDYN LDLPSKTILR DSEGREWTTK LTPWKDGRIW YYGGWASLCR VNRVNEADTC  240
LCEFVKRKGK KKYHIQVTIL RDK