PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_35760_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19337.4 Da PI: 10.4098 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.3 | 4.2e-28 | 13 | 63 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdaeva+i+fs tgkl+e+ss cra_locus_35760_iso_3_len_499_ver_3 13 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEVALIVFSATGKLFEFSS 63 68***********************************************96 PP | |||||||
2 | K-box | 44.1 | 8.7e-16 | 93 | 167 | 17 | 91 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 ++++a Lkke+ e+R+l+Ge+L+ L ++eL +Le+ +e +l+++ + K e ++++i +l+kke +l+ee cra_locus_35760_iso_3_len_499_ver_3 93 ENHNHALLKKELMGKTLELRQLKGEELQGLGMEELIKLEKMIEAGLNRVTKSKGEKYIKEITNLKKKEAQLREE 166 5677788888888888899******************************************************9 PP K-box 91 n 91 n cra_locus_35760_iso_3_len_499_ver_3 167 N 167 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-39 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.618 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-27 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-30 | 7 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 7 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.07E-38 | 7 | 79 | No hit | No description |
Pfam | PF00319 | 2.5E-25 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-27 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-27 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.113 | 90 | 167 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.0E-12 | 95 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
XRKKMVRQKI QIKKIDNLTA RQVTFSKRRR GLFKKAQELS TLCDAEVALI VFSATGKLFE 60 FSSSSMMQVI DRHGIYSKNY DKQDNPPLLP QCENHNHALL KKELMGKTLE LRQLKGEELQ 120 GLGMEELIKL EKMIEAGLNR VTKSKGEKYI KEITNLKKKE AQLREEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-21 | 5 | 97 | 1 | 93 | MEF2 CHIMERA |
6byy_B | 7e-21 | 5 | 97 | 1 | 93 | MEF2 CHIMERA |
6byy_C | 7e-21 | 5 | 97 | 1 | 93 | MEF2 CHIMERA |
6byy_D | 7e-21 | 5 | 97 | 1 | 93 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027160324.1 | 3e-78 | MADS-box protein SVP-like isoform X1 | ||||
Refseq | XP_027160325.1 | 3e-78 | MADS-box protein SVP-like isoform X1 | ||||
Refseq | XP_027160326.1 | 3e-78 | MADS-box protein SVP-like isoform X1 | ||||
Refseq | XP_027160328.1 | 1e-78 | MADS-box protein SVP-like isoform X3 | ||||
Swissprot | Q9FVC1 | 1e-64 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | X5D5Y5 | 6e-77 | X5D5Y5_COFAR; SVP-3 | ||||
STRING | XP_009802200.1 | 5e-73 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |