PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_34959_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23894.3 Da PI: 6.8819 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 2 | 49 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed++lvd+v+ +G g W+ a++ g++R++k+c++rw++yl cra_locus_34959_iso_2_len_629_ver_3 2 KGHWTSQEDKILVDYVRIHGEGKWRDLAQKTGLKRCGKSCRLRWLNYL 49 789*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4e-15 | 57 | 99 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +++E++l+++++++lG++ W++Ia +++ gR+++++k++w++ cra_locus_34959_iso_2_len_629_ver_3 57 NISEDEEDLIIKLHRLLGNR-WTLIAGRLP-GRSGNEIKNYWNTT 99 6699****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.2E-13 | 1 | 51 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.705 | 1 | 53 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-15 | 2 | 49 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.53E-28 | 2 | 96 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 3 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-10 | 5 | 49 | No hit | No description |
SMART | SM00717 | 5.0E-14 | 54 | 102 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.797 | 54 | 104 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.8E-14 | 57 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 57 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.58E-11 | 59 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
XKGHWTSQED KILVDYVRIH GEGKWRDLAQ KTGLKRCGKS CRLRWLNYLR PGIKLGNISE 60 DEEDLIIKLH RLLGNRWTLI AGRLPGRSGN EIKNYWNTTL SKKIVADEKN HNHNMTVTMQ 120 TQTDELEDDK KILLLSSSSD HDESVVANVS DPPPSLQHQP KGPNNTVKRS SITGCNNNNN 180 NNNDDDESET SFREYITNIS SNLPIMEGEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-25 | 2 | 104 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889357.1 | 3e-56 | myb-related protein 308 isoform X1 | ||||
Refseq | XP_021890730.1 | 2e-56 | transcription factor MYB114-like | ||||
Refseq | XP_024959256.1 | 2e-56 | transcription repressor MYB6-like | ||||
TrEMBL | A0A2N9EGI8 | 3e-55 | A0A2N9EGI8_FAGSY; Uncharacterized protein | ||||
STRING | VIT_09s0002g01410.t01 | 2e-55 | (Vitis vinifera) | ||||
STRING | evm.model.supercontig_126.33 | 7e-56 | (Carica papaya) |