PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3465_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 603aa MW: 67459.5 Da PI: 5.6978

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3465_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	540	594	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r rWT+ E e+l+++vk++ + Wk+I + kgRt ++k++w++ cra_locus_3465_iso_9_len_2641_ver_3 540 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 594 569***************************655446666***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	1.2E-5	300	341	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	1.48E-5	301	341	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50090	7.004	535	596	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.6E-10	536	601	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.97E-10	537	597	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-5	539	598	IPR001005	SANT/Myb domain
CDD	cd11660	6.11E-12	541	597	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRILETLFAQ GSQNDYADAS 60 AICQKVEFNP SDSCENVLWH MLHEMWTSNL KPGAPEILKW DVQAFIAHKR NSLPMVALQK 120 LMDATLEEQI MQEDCYVPRA EPAKNFKLDV HMIECTAVEK LRTSAKDGPL ANSSERIAEH 180 IDKKRCNLEN EAEIGGMAME YIGTHDAGNQ HAAKKFKQGV NIAALARVVK SIASTGDLLL 240 TDFDFDNDGA NPFAATDGDE YHDERNDIGS KKKLSLALSA DTMKIPWKHN KLYVXSAIVA 300 GNFLFCSSNT CPXVVHESCL GSAAKFDGDG KFNCSFCAYS RALSEYLEVK TKASLARKDL 360 STFIGLKVGN QPKLSMRSRK SKQNPVTGID ELNENHEENV DGDSLNKADH TYRRTNVEDR 420 LQAEPSISYV GNGPPCSEKV LYLTHGELNA LENENVEGEG REQERQSPIQ PEEQQIVIFQ 480 KSDGDISSPK QADIDYGNGG QALIIRQNDE ESSGLKYSMR PRTDNEKCTY PAIPQLRRKR 540 HRWTEAEVEK LKEGVKKFSA EESLSIPWKA IFEFGADVFQ KGRTSVDLKD KWRNICKMDQ 600 KSE

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRILETLFAQ GSQNDYADAS  60
AICQKVEFNP SDSCENVLWH MLHEMWTSNL KPGAPEILKW DVQAFIAHKR NSLPMVALQK  120
LMDATLEEQI MQEDCYVPRA EPAKNFKLDV HMIECTAVEK LRTSAKDGPL ANSSERIAEH  180
IDKKRCNLEN EAEIGGMAME YIGTHDAGNQ HAAKKFKQGV NIAALARVVK SIASTGDLLL  240
TDFDFDNDGA NPFAATDGDE YHDERNDIGS KKKLSLALSA DTMKIPWKHN KLYVXSAIVA  300
GNFLFCSSNT CPXVVHESCL GSAAKFDGDG KFNCSFCAYS RALSEYLEVK TKASLARKDL  360
STFIGLKVGN QPKLSMRSRK SKQNPVTGID ELNENHEENV DGDSLNKADH TYRRTNVEDR  420
LQAEPSISYV GNGPPCSEKV LYLTHGELNA LENENVEGEG REQERQSPIQ PEEQQIVIFQ  480
KSDGDISSPK QADIDYGNGG QALIIRQNDE ESSGLKYSMR PRTDNEKCTY PAIPQLRRKR  540
HRWTEAEVEK LKEGVKKFSA EESLSIPWKA IFEFGADVFQ KGRTSVDLKD KWRNICKMDQ  600
KSE