PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3458_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 294aa MW: 33612.2 Da PI: 7.013 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.3 | 1.1e-07 | 233 | 265 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + cra_locus_3458_iso_1_len_1314_ver_3 233 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 265 59*****************************87 PP | |||||||
2 | ELK | 29.4 | 1.8e-10 | 186 | 207 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ cra_locus_3458_iso_1_len_1314_ver_3 186 ELKHELKQGYKEKIVDIREEIL 207 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.1E-20 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.3E-17 | 27 | 68 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.7E-4 | 85 | 129 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 186 | 206 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.3E-7 | 186 | 207 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 186 | 207 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 206 | 269 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.15E-16 | 208 | 272 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.6E-11 | 208 | 273 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-10 | 209 | 268 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 213 | 270 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.1E-18 | 226 | 265 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTLKVVVKKK EKNRNXKEKF EREREKCKAE ILNHPLYDQL LAAHVSCLRI ATPVDQLPRI 60 DAQLAQSQHV VAKYSAVLRS HGHDPQQQVL DDKDLDQFMN NCSNMSEXHA MEAVMACWEL 120 EQSLQSLTGV APSEGTGATM SDDDDDQADS DANLFDGGLD AQDSMGFGPL TPTESERSLM 180 ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SLLKAWWQSH SKWPYPTEED 240 KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSSSQKSK RKSAGEKSNN EQFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 209 | 274 | 8 | 73 | Homeobox protein PKNOX1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070442.1 | 1e-159 | homeobox protein knotted-1-like 11 isoform X2 | ||||
Refseq | XP_027176942.1 | 1e-159 | homeobox protein knotted-1-like 11 isoform X2 | ||||
Swissprot | P48000 | 1e-151 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A068UPN6 | 1e-158 | A0A068UPN6_COFCA; Uncharacterized protein | ||||
STRING | VIT_04s0008g06130.t01 | 1e-155 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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