PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3368_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 572aa    MW: 61488 Da    PI: 5.0296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3368_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11386428754
                                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  cra_locus_3368_iso_1_len_2177_ver_3 386 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 428
                                          79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16382447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9385428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16386441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.76E-13386432No hitNo description
CDDcd048736.49E-7501561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MVWMDGKDQE TGSWDQNPMN NVGANSNNNN QNGVLENKDD MEMGPLSTFK SMLEVEDEDW  60
YLASNQNHHG NNNNNSVDGG NNGGNMQSHH ELRDLTFSAN FTDADQNLML HPVDSSASCS  120
PSPASVFNNL DPSQVHHYFL QPPPKTNLLS GLNVLSGSQL DGSGFDLGCE TSGLLGNHQG  180
LSAFGRGGVG IVNGGFSDLG SQSQISSPNL NSGTQFSSAH LLQMPQNTGG GFGTFGFGEG  240
SGNVNSLFLN RSKLLQPLDN FTSVGAQPTL FQKRAALRKN LATNGSNLGV LGGEIGQSSA  300
TSLDAYKNKE IGEVNLLKRK NSTGDDFEDA SIDGSNLNYD SDDLTENTKL VEDGIRNGGN  360
SSNANSTVTG EDQKGKKKGL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD  420
AIEYLKELLQ KINDLQNELE STPSGSSLTP TTTFYPLTPT ASALPCRIKE EMCPSSFASP  480
LSSPTGQPAR SGYVKEXAVN IHMFCGRRPG LLLSTMRALD SLGLDIQQAV ISCFNGFALD  540
IFRAEQCKEG QDIPPEHIKA VLLDSAGFQG MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14381438663Transcription factor MYC2
5gnj_B3e-14381438663Transcription factor MYC2
5gnj_E3e-14381438663Transcription factor MYC2
5gnj_F3e-14381438663Transcription factor MYC2
5gnj_G3e-14381438663Transcription factor MYC2
5gnj_I3e-14381438663Transcription factor MYC2
5gnj_M3e-14381438663Transcription factor MYC2
5gnj_N3e-14381438663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375393KKKGLPAKNLMAERRRRKK
2387394ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122788.10.0transcription factor ICE1-like
RefseqXP_027122789.10.0transcription factor ICE1-like
TrEMBLA0A068VGT40.0A0A068VGT4_COFCA; Uncharacterized protein
STRINGXP_009769541.10.0(Nicotiana sylvestris)