PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3361_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 559aa MW: 60003.5 Da PI: 6.4515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3361_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	378	426	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq cra_locus_3361_iso_5_len_1893_ver_3 378 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 426 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.26E-11	373	430	No hit	No description
SuperFamily	SSF47459	7.46E-17	373	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	375	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	376	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	378	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	381	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MADKDNLEPE KRRNEDLLNY HSSNMPQDWQ LSTSNLANAS MGVISSGNPM AACKGNMLES 60 SSCSSATMVE SFCPMWDQPT SSQNIGFSDI NVQHNTSTSN ALGNRPSGLV PLRPGGLDGI 120 AGLGWAPANA MLKGSMFLPG TPGFIPQTLP HFPADSGFIE RAARYSCFSG GNFGDIMNPF 180 SIAESMNPYS RIQVSAQASQ EAFITNGLNT SSGPQSQKNE MNMGQIAKPV CLPAEHGTSA 240 GSPLKNEKNS ESLARSHDEA KRGVGGSSNE SDEAEFSGRG AQEELDGAGV EASSKGVGSK 300 KRRRSNQDAE MDQNKGFSQP TSDAKKDHCS EIQHKEDQNP TSNTSKPSGK NAKQGTHASD 360 SLKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN 420 YVQSLQRQVE FLSMKLATVN PRLDFNLEGL LTKDILQPRA GPLSSLAFPP DMTLSYPPLH 480 QSQGIVQTGS NSLGNSTDAL RRCINLPLAA MSGGYKEANP HASSAWDDEL NNIVQMGLNS 540 SAPLSSQDLS GPLPPGHMX

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MADKDNLEPE KRRNEDLLNY HSSNMPQDWQ LSTSNLANAS MGVISSGNPM AACKGNMLES  60
SSCSSATMVE SFCPMWDQPT SSQNIGFSDI NVQHNTSTSN ALGNRPSGLV PLRPGGLDGI  120
AGLGWAPANA MLKGSMFLPG TPGFIPQTLP HFPADSGFIE RAARYSCFSG GNFGDIMNPF  180
SIAESMNPYS RIQVSAQASQ EAFITNGLNT SSGPQSQKNE MNMGQIAKPV CLPAEHGTSA  240
GSPLKNEKNS ESLARSHDEA KRGVGGSSNE SDEAEFSGRG AQEELDGAGV EASSKGVGSK  300
KRRRSNQDAE MDQNKGFSQP TSDAKKDHCS EIQHKEDQNP TSNTSKPSGK NAKQGTHASD  360
SLKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDFNLEGL LTKDILQPRA GPLSSLAFPP DMTLSYPPLH  480
QSQGIVQTGS NSLGNSTDAL RRCINLPLAA MSGGYKEANP HASSAWDDEL NNIVQMGLNS  540
SAPLSSQDLS GPLPPGHMX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027154690.1	0.0	transcription factor bHLH49 isoform X1
Refseq	XP_027154691.1	0.0	transcription factor bHLH49 isoform X1
Refseq	XP_027154693.1	0.0	transcription factor bHLH49 isoform X1
TrEMBL	A0A068TYR5	0.0	A0A068TYR5_COFCA; Uncharacterized protein
STRING	POPTR_0010s14600.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50