PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_33317_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 309aa MW: 33946.6 Da PI: 8.2343 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 6e-39 | 78 | 138 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ cra_locus_33317_iso_3_len_1120_ver_3 78 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-35 | 62 | 131 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.9E-33 | 81 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVFSSLPIYL DPPNWQQQQQ QQGAGAGGSS GGTHDHHNHH QLPPIVPQPP QGGGDGTSSI 60 IRPGSMTERA RLAKIPQPET ALKCPRCEST NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSKRS RSKSPIMSGG GDCQITNLPS TSAQNLPLPI PQVQLPSFFA 180 PPHHDFGNNG ENIGLNFCGI QDGNLNLRFG DNNQWKLQHF PNFFSGLEVQ PSTFDHHEEL 240 GYVGGAISEN QVGSNNKITT LEVEASHDQV KMEDNNGNNN YQLYWSGNNT SWIDLSAGTN 300 STPTAGHLI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436002.1 | 2e-76 | dof zinc finger protein DOF3.6 | ||||
Refseq | XP_006486095.1 | 2e-76 | dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A067FW23 | 4e-75 | A0A067FW23_CITSI; Uncharacterized protein | ||||
STRING | XP_006486095.1 | 9e-76 | (Citrus sinensis) | ||||
STRING | XP_006436002.1 | 9e-76 | (Citrus clementina) |