PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_33317_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 309aa MW: 33946.6 Da PI: 8.2343

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_33317_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	78	138	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ cra_locus_33317_iso_2_len_1127_ver_3 78 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-35	62	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-33	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVFSSLPIYL DPPNWQQQQQ QQGAGAGGSS GGTHDHHNHH QLPPIVPQPP QGGGDGTSSI 60 IRPGSMTERA RLAKIPQPET ALKCPRCEST NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSKRS RSKSPIMSGG GDCQITNLPS TSAQNLPLPI PQVQLPSFFA 180 PPHHDFGNNG ENIGLNFCGI QDGNLNLRFG DNNQWKLQHF PNFFSGLEVQ PSTFDHHEEL 240 GYVGGAISEN QVGSNNKITT LEVEASHDQV KMEDNNGNNN YQLYWSGNNT SWIDLSAGTN 300 STPTAGHLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436002.1	2e-76	dof zinc finger protein DOF3.6
Refseq	XP_006486095.1	2e-76	dof zinc finger protein DOF3.6
TrEMBL	A0A067FW23	4e-75	A0A067FW23_CITSI; Uncharacterized protein
STRING	XP_006486095.1	9e-76	(Citrus sinensis)
STRING	XP_006436002.1	9e-76	(Citrus clementina)