PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3323_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-X1
Protein Properties Length: 384aa    MW: 42603 Da    PI: 8.1819
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3323_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.11.6e-07235254120
                             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                          CG H+C+++CH G+C pC++
  cra_locus_3323_iso_6_len_1235_ver_3 235 CGTHRCGEICHDGECAPCRE 254
                                          ******************85 PP
2zf-NF-X117.11.2e-05288306119
                             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                          CGkH C++ CHeG+C++Cp
  cra_locus_3323_iso_6_len_1235_ver_3 288 CGKHACSRGCHEGECGECP 306
                                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.53E-673144No hitNo description
PROSITE patternPS01359074137IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.50674138IPR001841Zinc finger, RING-type
CDDcd060081.37E-6171219No hitNo description
PfamPF014224.6183200IPR000967Zinc finger, NF-X1-type
SMARTSM004385.8183201IPR000967Zinc finger, NF-X1-type
CDDcd060084.90E-7225273No hitNo description
PfamPF014221.4E-4235253IPR000967Zinc finger, NF-X1-type
SMARTSM004380.003235254IPR000967Zinc finger, NF-X1-type
CDDcd060083.69E-9278321No hitNo description
PfamPF014220.0054288306IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038288307IPR000967Zinc finger, NF-X1-type
CDDcd060087.37E-10332381No hitNo description
PfamPF014229.7E-4342361IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013342362IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MASTAMPPLS PPSSDSDSDS PSSSRNQHHP HNDLSSTIFK SYLEHTANNS SSQQQDLVKI  60
QSFLTSSRSG ALSCLICLER IKPTEPTWSC SSRCFAVFHL ICIQSWAHQS SNLAAARAAS  120
RAVSVKDESL LWHCPKCRIE YPKSETPKYY YCFCGKLENP PHDPWVLPHS CGEICGRPLK  180
YNCGHHRLLL CHPGPCPSCP KLVKTRCYCG ATEDVRRCGF KNFSCDQLCR KSLACGTHRC  240
GEICHDGECA PCREKGIYKC QCRKVKMERD CCEKDFRCDN PCNKLLGCGK HACSRGCHEG  300
ECGECPFQGK RTCPCGKRVY EGMACDVAVP LCGGTCDKLL TCGLHRCPER CHRGPCIETC  360
RTIVSKSCRC GSSKKQVPCY QDLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154808.10.0NF-X1-type zinc finger protein NFXL2-like isoform X2
SwissprotQ9FFK81e-164NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A022PW410.0A0A022PW41_ERYGU; Uncharacterized protein (Fragment)
TrEMBLA0A2Z7BEJ20.0A0A2Z7BEJ2_9LAMI; Uncharacterized protein
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
STRINGMigut.F00683.1.p0.0(Erythranthe guttata)