PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3317_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 385aa MW: 43983.4 Da PI: 10.0121

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3317_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.7	4e-31	98	151	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ cra_locus_3317_iso_2_len_1655_ver_3 98 PRLRWTPDLHLSFVHAIERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 151 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-28	94	152	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.523	94	154	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-14	97	152	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-22	98	152	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	99	150	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
METMMMPSVI SQKSEMSMEA PAESNDSQIN VSSIDLNEEL SSSQLEDEET ASSGCEKSSR 60 ELGNSENTTT SYNTKYSGLD HQRKNEKKVR QYIRSKLPRL RWTPDLHLSF VHAIERLGGQ 120 ERATPKLVLQ LMNVRGLSIA HVKSHLQMYR SKRLDESGQV LGRANRGVFQ AGKGYNIPDK 180 MGNPLLLQHN LRFHNLITSH HHSLHQSPYY IRSLSSRYQQ WHPYGKDTTI KARALMSMDN 240 NQHGNNRSWV NYGMHGAGST RNINGPIRPS RLHEEKRWPP PRERIMISKL ENAPAVSRPC 300 SNQLGNNSVG TNYLKQRYNN YWKCSSSRDS CFKPSNFIPN HLLQQKNDDK VLDGKDWRLP 360 DDLQLSLRPS TKGDSDVNTM LSLSL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

METMMMPSVI SQKSEMSMEA PAESNDSQIN VSSIDLNEEL SSSQLEDEET ASSGCEKSSR  60
ELGNSENTTT SYNTKYSGLD HQRKNEKKVR QYIRSKLPRL RWTPDLHLSF VHAIERLGGQ  120
ERATPKLVLQ LMNVRGLSIA HVKSHLQMYR SKRLDESGQV LGRANRGVFQ AGKGYNIPDK  180
MGNPLLLQHN LRFHNLITSH HHSLHQSPYY IRSLSSRYQQ WHPYGKDTTI KARALMSMDN  240
NQHGNNRSWV NYGMHGAGST RNINGPIRPS RLHEEKRWPP PRERIMISKL ENAPAVSRPC  300
SNQLGNNSVG TNYLKQRYNN YWKCSSSRDS CFKPSNFIPN HLLQQKNDDK VLDGKDWRLP  360
DDLQLSLRPS TKGDSDVNTM LSLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-18	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-18	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-18	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-18	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105537.1	1e-87	transcription factor HHO1-like
TrEMBL	A0A068TN77	4e-86	A0A068TN77_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34