PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3317_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 291aa MW: 33415.9 Da PI: 10.4774 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.2 | 5e-15 | 29 | 57 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk +l+lm+v gL+++hvkSHLQ+YR+ cra_locus_3317_iso_1_len_1051_ver_3 29 ATPKLVLQLMNVRGLSIAHVKSHLQMYRS 57 9***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 28 | 58 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-10 | 29 | 58 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
NXKAWWPRKQ LSVEDVDPXX XCEWVLAGAT PKLVLQLMNV RGLSIAHVKS HLQMYRSKRL 60 DESGQVLGRA NRGVFQAGKG YNIPDKMGNP LLLQHNLRFH NLITSHHHSL HQSPYYIRSL 120 SSRYQQWHPY GKDTTIKARA LMSMDNNQHG NNRSWVNYGM HGAGSTRNIN GPIRPSRLHE 180 EKRWPPPRER IMISKLENAP AVSRPCSNQL GNNSVGTNYL KQRYNNYWKC SSSRDSCFKP 240 SNFIPNHLLQ QKNDDKVLDG KDWRLPDDLQ LSLRPSTKGD SDVNTMLSLS L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105537.1 | 3e-46 | transcription factor HHO1-like | ||||
TrEMBL | A0A068TN77 | 1e-44 | A0A068TN77_COFCA; Uncharacterized protein |