PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3304_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 569aa MW: 62315.8 Da PI: 8.0196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3304_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H cra_locus_3304_iso_3_len_2148_ver_3 70 FICEICNKGFQREQNLQLHRRGH 92 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.0E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.13E-6	69	92	No hit	No description
Pfam	PF12171	2.3E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0044	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	112	142	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.13E-6	142	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DPDAEVIALS 60 PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLRQ KTNKDQVKKK VYICPEKSCV 120 HHDPCRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAIQKLAE LENINAIVEH 180 FSPGIYIEFN FENILCTDTN YLHLLRTNDY VQLMFVIITE LNFFLLQEGS FITHRAFCDA 240 LAEESSRITS IPTSNLNFRN DLPAHVFTGG STGIPQIGGA EFGNQLKPPP PRLSLWLDQA 300 NSQQLNSVDV SGNSSIYMNS ANIFTSSAGG NLSLSPLPPL QQSLKDVDGG IMNKSTSMAE 360 TLSSLFSDDN HRNIGSNSSG PMSATALLQK AAQMGSTKSN PIFFSNSLGV MSSSNSSSSS 420 PVPVPVPAFS LSHNRNQQLL QTTTSSLDNN SFEFDQSMLQ TSQNESPSTT TVTMMNFQGQ 480 GLNGGSVEHH NSLTRDFLGM GAGEGGRPLL PHELAKFASM SSAMGLDLGH FSSHHXSQSA 540 LVSTNVAYHS PSETDSIQTR NREFITLYT

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DPDAEVIALS  60
PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLRQ KTNKDQVKKK VYICPEKSCV  120
HHDPCRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAIQKLAE LENINAIVEH  180
FSPGIYIEFN FENILCTDTN YLHLLRTNDY VQLMFVIITE LNFFLLQEGS FITHRAFCDA  240
LAEESSRITS IPTSNLNFRN DLPAHVFTGG STGIPQIGGA EFGNQLKPPP PRLSLWLDQA  300
NSQQLNSVDV SGNSSIYMNS ANIFTSSAGG NLSLSPLPPL QQSLKDVDGG IMNKSTSMAE  360
TLSSLFSDDN HRNIGSNSSG PMSATALLQK AAQMGSTKSN PIFFSNSLGV MSSSNSSSSS  420
PVPVPVPAFS LSHNRNQQLL QTTTSSLDNN SFEFDQSMLQ TSQNESPSTT TVTMMNFQGQ  480
GLNGGSVEHH NSLTRDFLGM GAGEGGRPLL PHELAKFASM SSAMGLDLGH FSSHHXSQSA  540
LVSTNVAYHS PSETDSIQTR NREFITLYT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175139.1	1e-152	zinc finger protein JACKDAW
TrEMBL	A0A068UDX2	1e-149	A0A068UDX2_COFCA; Uncharacterized protein
STRING	cassava4.1_032876m	1e-148	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350