PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3299_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 29728.3 Da PI: 5.0677 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.4e-18 | 43 | 93 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F + ++ +++ eLA++lgL+ rqV++WFqN+Ra++k cra_locus_3299_iso_2_len_1200_ver_3 43 RFSDEQVKSLESMFGQGTKIEPRKKIELARNLGLQPRQVSIWFQNKRARWK 93 79************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.4 | 3.3e-37 | 42 | 131 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeen 77 +r+s+eqvk+LE++F + +k+ep++K elar+Lglqprqv +WFqn+RAR+k+kq+E++y L++++d l+++ cra_locus_3299_iso_2_len_1200_ver_3 42 KRFSDEQVKSLESMFGQGTKIEPRKKIELARNLGLQPRQVSIWFQNKRARWKSKQIEQEYGLLRDNFDDLNQQF 115 8************************************************************************* PP HD-ZIP_I/II 78 erLekeveeLreelke 93 ++L++e+e+L +++++ cra_locus_3299_iso_2_len_1200_ver_3 116 KSLKEENESLLQQVQT 131 ***********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 31 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.568 | 35 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-17 | 37 | 99 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-18 | 40 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.4E-16 | 43 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.00E-13 | 43 | 96 | No hit | No description |
PRINTS | PR00031 | 4.2E-6 | 66 | 75 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 70 | 93 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-6 | 75 | 91 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.7E-12 | 95 | 136 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEQEQDYYYS EQEQSLELDY TKEKKNYPTD HSKKKKGENS VKRFSDEQVK SLESMFGQGT 60 KIEPRKKIEL ARNLGLQPRQ VSIWFQNKRA RWKSKQIEQE YGLLRDNFDD LNQQFKSLKE 120 ENESLLQQVQ TLRSRLRNSI ENGVQRESEN GNDENCDKEE LKEKEKHRGA LYWXXXXDDD 180 DDDDEQKTGL EKGKNCNNNV CVDGRRSLAS SHSHSQTDDH HHNKEEEQYW CNFPTAGDLL 240 DESSSGWWNH I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | P46897 | 2e-37 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Publications ? help Back to Top | |||
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